Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0271 ATGGAGACGTTGCGACGGCTTACGAAGCTTTGGTTGATTCCATTATTATTGGTAGCCGTAGCCAAAGCTCAATCCCTTGAAGGCTGCCTCCCTAAATGTGGAGATGTAGAGATTCCTTATCCATTTGGCGTTGGTGTGCAACCTGGTACTGGTCGCAATTGCTTCCTACAAGAATCATTTAATCTCACTTGCAATAGCTCCACCTCCACATTATTCTACGGAGACCATCCAGTTTCCAACATATCTGATCAAGGTGGTCATCTTGACATTTCCATGTCTGTCTCCAAGATTTGTTACAATCAACCTGGCGGCGCTGTGTCTAACAATCCCTATCTTGGAAACACTCCTTCTTTCGCCGTTTCCAGCACCCAAAACAAGTTCCTAAGTGTCGGTTGCGACACTTTGGGCATAATTCAATTCCAAAACAATCTTTCTTATTATGGTGGCTGCGTCACGCTATGTGACAGACCTCCTCAACAAGATTTGAATGATAAAACTTGTTCGGGGACTGGGTGTTGCCAGGTGGATATTCCTGTGGGAATGAGAAATATCAGCGTTGCAGCATCCTCCGTCTTCAACCACTCAAACGTGTTGGATTTCAACAACTGCAGCTATGCTTTTGTTGCCAAACAGGGTTGGTTTAATTTCTCCATTGATTATCTACGCGACTTCCCATATGACATGGTCCCACTTGTCCTAGATTGGACCGTTTCAGATGATACTTGTCAAGCTGCTTCACCCAAATCAGACTATGCCTGCACCTCTAACACTGGTTGTGTCGACTCCGATGATGGATTTGGGTACAACTGCAGATGCAAACCCGGTTTCGATGGAAACCCGTACCATCCAGATGGGTGTCACGATGTAGACGAATGCCAGGAATCGACCAACAATTGCATAAGTAAAGAAAATTGCCGCAACACGATTGGATCTTTTGAGTGTTTTTGTCCGCCTGGCTACTCTGGGAATGGAACCACGGCCGGAGGCTGCCACCCACCCTTGTCAAAGAATCCACTTACCATGATCTTCATTGGTGTAAGTATAGGCTTGGCAGCTCTGTTTATGAAATACATGCAAACAAATCAACTGACAGAGAAGAGCGATGTGTATAGTTTTGGGGTGGTGCTCGTAGAGCTGCTAACTTGGAAGAAAGCGGTTTCGTTTGAGAGGCCAGAAGAGGAAGTAAATCTTGCAATGCACTTCCTTTCAAACCTGAAGCAGGGTCACTTACATGAAGTTGTGGAGAATGGCATGATGAATGAAGAAAATAAGGAGAGGGTGAAGGAGGTGGCGATGCTTGCAGCGAGGTGTGTGAGACTGAGAGGAGAGGAGAGACCCAGCATGAAGGAAGTAGCAGCGGAGTTAGAGGGAATAAAGATGACGATAGGGAATCAGTCATGGATGAAGAAAGAGCTGAGTTTGGAGGAAGCTCAAGCATTGCTGGGCGAGACATCCAATTGTAGTGAATATGGTGGGGATAGCATTAATCATGGAAACACAACAGTTTGGGATAGTATTACGGATCATGTTCTAATTGACTTGGACAGCGGTAGATAG 1557 0.4566 METLRRLTKLWLIPLLLVAVAKAQSLEGCLPKCGDVEIPYPFGVGVQPGTGRNCFLQESFNLTCNSSTSTLFYGDHPVSNISDQGGHLDISMSVSKICYNQPGGAVSNNPYLGNTPSFAVSSTQNKFLSVGCDTLGIIQFQNNLSYYGGCVTLCDRPPQQDLNDKTCSGTGCCQVDIPVGMRNISVAASSVFNHSNVLDFNNCSYAFVAKQGWFNFSIDYLRDFPYDMVPLVLDWTVSDDTCQAASPKSDYACTSNTGCVDSDDGFGYNCRCKPGFDGNPYHPDGCHDVDECQESTNNCISKENCRNTIGSFECFCPPGYSGNGTTAGGCHPPLSKNPLTMIFIGVSIGLAALFMKYMQTNQLTEKSDVYSFGVVLVELLTWKKAVSFERPEEEVNLAMHFLSNLKQGHLHEVVENGMMNEENKERVKEVAMLAARCVRLRGEERPSMKEVAAELEGIKMTIGNQSWMKKELSLEEAQALLGETSNCSEYGGDSINHGNTTVWDSITDHVLIDLDSGR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0271 518 Pfam Wall-associated receptor kinase galacturonan-binding 29 85 IPR025287 GO:0030247
Lele03g0271 518 ProSiteProfiles EGF-like domain profile. 288 326 IPR000742 -
Lele03g0271 518 ProSitePatterns Calcium-binding EGF-like domain signature. 288 314 IPR018097 GO:0005509
Lele03g0271 518 Gene3D Laminin 290 326 - -
Lele03g0271 518 PANTHER OSJNBA0016N04.9 PROTEIN 14 307 - -
Lele03g0271 518 Pfam Protein tyrosine and serine/threonine kinase 358 455 IPR001245 GO:0004672|GO:0006468
Lele03g0271 518 SMART egf_5 291 331 IPR000742 -
Lele03g0271 518 SMART egf_5 241 287 IPR000742 -
Lele03g0271 518 Pfam Calcium-binding EGF domain 288 330 IPR001881 GO:0005509
Lele03g0271 518 SMART egfca_6 288 331 IPR001881 GO:0005509
Lele03g0271 518 CDD EGF_CA 288 322 - -
Lele03g0271 518 FunFam Fibrillin 2 283 328 - -
Lele03g0271 518 SUPERFAMILY Protein kinase-like (PK-like) 358 458 IPR011009 -
Lele03g0271 518 Gene3D Laminin 239 289 - -
Lele03g0271 518 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Lele03g0271 518 SUPERFAMILY EGF/Laminin 288 323 - -
Lele03g0271 518 Gene3D Transferase(Phosphotransferase) domain 1 331 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0271 Lele-ChrLele03 1498041 1500851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0271 333 518 Receptor kinase-like Gene Family AT1G21230 40.323 8.32e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lele03g0271 PK_Tyr_Ser-Thr 3.2e-09 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0266 01 1505695 1508517 Lele03g0271 03 1498041 1500851 hybridization
Lele02g0252 02 1430067 1433336 Lele03g0271 03 1498041 1500851 hybridization