Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0229 ATGTGCTATAGTAATTCCAGCGTGGTGGGAGGTGAAGGAAGAGTGCAAGACACGAGTCGTTTGGGCGTGTGGAATAGGCATGTCTCGATCGAGAGGAGTTACAGGCTGGCCCTATTTGTTTCGCCCACGCTTGACTCTGTTCGCCATAGTACAGAAACAAAAATCATGGAGCAAAGCATCCTATGCAAATACACAGTGCATCACAGCGTTACCAAGAAGCTCGCAAGGCCCAAGGGCACTGATTTGAGCAATCCGACCGGGCCCCGATTCGTACGGATATCCGTTACTGACCCGGATGCCACGGACTCCTCCAGCGACGAGGAAGGAGAGTTTCTTGGTCGACCTAGAGTGAAGCGGTATGTGAACCAGATTGACATCGAGACTACAGCGAGAAACGGGGCCCTCCCCAACAATGCCCGGAAGAGGCCCGCCGGGAGCTCCGCTACTTGCCGGCGGCCGGCAAAGGTTTCCACGGAGAATAACGGCAGGAAGTTCCGAGGCGTACGGCAAAGACCATGGGGGAAATGGGCGGCGGAGATTAGAGATCCAGCGAGACGAGTACGGCTCTGGCTGGGAACGTATGATACGGCGGAGGAAGCGGCCATGGTGTACGATAATGCGGCGATTAAGCTGCGAGGTCCCGACGCTTTGACGAACTTTGTGACGCCACCGGCGAGGGAAAAGGCTGAAGAAGTGGAAGTAGAAGTGAACGAGAAGCCGGAAATGAAAGTTTCAGTGCAGTCAGAAGCATCCGGTTCGGGCTACGATTCAGGAGAGGAGTCTCGTAATCTTTCGTCTCCGATATCAGTGCTTCAGTTTAGAAGCAATTCGAGCGAGGAAGCAGAGCCGGAAAAGGCGACGGGAGCATGGGGAGCAGAGGCGGAAAGAGAAGAAACAGGGGAAGAGCCATTTGGGGAGTGCGAAGAGGAAACGAGTCGGAGGAGGTTGTGGGAGGAGGAGGAGTGTTGGAGGACAGAGATGCCGGTGTGGGATGATGTGTTGATGAATTTTGAAACACCAGAGTATTCGCCGGTGATGTGGGAAGAACCGTCGCCGATGTACTGGGAAACGACGACGAGAGTGATGGTGGAGGAGATTGGGAGCGTGGGGGAGATAGATTGGGAGAGAATGTACTCGCCATCAGGGATGTGCCAGGTGGACGATTACTTTCAGGACATATTGTTAGGGTCAGATCCTCTGGTGGCGCTCTGA 1212 0.5454 MCYSNSSVVGGEGRVQDTSRLGVWNRHVSIERSYRLALFVSPTLDSVRHSTETKIMEQSILCKYTVHHSVTKKLARPKGTDLSNPTGPRFVRISVTDPDATDSSSDEEGEFLGRPRVKRYVNQIDIETTARNGALPNNARKRPAGSSATCRRPAKVSTENNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFVTPPAREKAEEVEVEVNEKPEMKVSVQSEASGSGYDSGEESRNLSSPISVLQFRSNSSEEAEPEKATGAWGAEAEREETGEEPFGECEEETSRRRLWEEEECWRTEMPVWDDVLMNFETPEYSPVMWEEPSPMYWETTTRVMVEEIGSVGEIDWERMYSPSGMCQVDDYFQDILLGSDPLVAL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0229 403 Pfam AP2 domain 164 213 IPR001471 GO:0003700|GO:0006355
Lele03g0229 403 MobiDBLite consensus disorder prediction 129 160 - -
Lele03g0229 403 MobiDBLite consensus disorder prediction 226 312 - -
Lele03g0229 403 MobiDBLite consensus disorder prediction 244 277 - -
Lele03g0229 403 MobiDBLite consensus disorder prediction 75 112 - -
Lele03g0229 403 FunFam Ethylene-responsive transcription factor 2 163 222 - -
Lele03g0229 403 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Lele03g0229 403 PRINTS Ethylene responsive element binding protein signature 187 203 IPR001471 GO:0003700|GO:0006355
Lele03g0229 403 MobiDBLite consensus disorder prediction 226 242 - -
Lele03g0229 403 ProSiteProfiles AP2/ERF domain profile. 164 221 IPR001471 GO:0003700|GO:0006355
Lele03g0229 403 SMART rav1_2 164 227 IPR001471 GO:0003700|GO:0006355
Lele03g0229 403 CDD AP2 164 220 IPR001471 GO:0003700|GO:0006355
Lele03g0229 403 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 88 306 - -
Lele03g0229 403 SUPERFAMILY DNA-binding domain 164 221 IPR016177 GO:0003677
Lele03g0229 403 Gene3D AP2/ERF domain 163 222 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0229 Lele-ChrLele03 1245446 1247984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0229 62 304 AP2-EREBP Transcription Factor Family AT4G27950 45.420 1.47e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele03g0229 AP2 8.3e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0229 03 1245446 1247984 Lele03g0229 03 1245446 1247984 ECH
Lele01g0222 01 1269962 1271008 Lele03g0229 03 1245446 1247984 hybridization
Lele02g0219 02 1220601 1221647 Lele03g0229 03 1245446 1247984 hybridization