Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0222 ATGGATGACAGCTTTTCTGATATTCTTGAAGACAAGGAACTTGGTGGGGAAGACCTCTTTGCCATTTTGGAGAGCTTCGAGAACTCCTCCGACTTTCCTCCCGTTGACGAAGTTGTTGTTAGCAGTAAGGAGAACGAGGAAACTTCAAGGTTCGTGTCACAAAAATCAACTTCTTCAAGTGCTCTGGAAGAGTCTGAAGAAACTGAGCTTGAAGCTTCACCCAAAAGCAAGAGACAGAAGCTCGCACTTACCACTTCGTGGGAGGATCCAAACCCAGATGGCCAACAAAGGATATCTCATATCACTGTGGAGCGCAACCGAAGAAAGCAAATGAACGAGCACTTGTCCGTCTTAAGGTCACTTATGCCAAACTTTTATGTCAAACGTGGAGACCAAGCATCGATAATTGGAGGAGTTGTTGATTATATAAACGAGTTGCAGCAGGTTCTACAGTCCCTGGAAGCCAAGAAGCAGAGAAAAGTATACAGTGAAGTGCTAAGCCCTAGGCTAGTCTCAAGTCCAAGGCCTTTAGCTCTTAGTCCTAGAAAACCCCCTATGAGCCCTAGGCTAAGCTTGCCCATTAGCCCCAGGACTCCACAACCAGGTAGTCCTTACAAGCCCAGGTTGCAGCTAGGTTACCTTTCTCCAACCATCTCCAACTCTCTCGAGCCATCTCCTACCTCTTCTGCTGCTTCGTCCTCCATTAACGATAACATCAATGAGCTTGTGGCCAATTCCAAGTCTGCTATGGCCGATGTGGAGGTCAAGTTTTCTGGGCCACACGTTCTTTTGAAAACAGTGTCTCCGCGTATTCCAGGGCAAGCTTTGAAGATCATATCAACACTTGAAAACCTATCGCTTGAAATCCTCCATGTCAGCATCAGCCCTGCTGATGAAACCATGATAAACTCATTCACTATTAAGATTGGAGTTGAATGCCAACTCAGTGCCGAAGAACTCGCTCTACAAATCCAGCAGACATTCAGCTGA 990 0.4636 MDDSFSDILEDKELGGEDLFAILESFENSSDFPPVDEVVVSSKENEETSRFVSQKSTSSSALEESEETELEASPKSKRQKLALTTSWEDPNPDGQQRISHITVERNRRKQMNEHLSVLRSLMPNFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKVYSEVLSPRLVSSPRPLALSPRKPPMSPRLSLPISPRTPQPGSPYKPRLQLGYLSPTISNSLEPSPTSSAASSSINDNINELVANSKSAMADVEVKFSGPHVLLKTVSPRIPGQALKIISTLENLSLEILHVSISPADETMINSFTIKIGVECQLSAEELALQIQQTFS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0222 329 Coils Coil 139 159 - -
Lele03g0222 329 Gene3D - 89 160 IPR036638 GO:0046983
Lele03g0222 329 MobiDBLite consensus disorder prediction 40 96 - -
Lele03g0222 329 MobiDBLite consensus disorder prediction 173 209 - -
Lele03g0222 329 CDD bHLH_AtFAMA_like 98 169 - -
Lele03g0222 329 MobiDBLite consensus disorder prediction 178 203 - -
Lele03g0222 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983
Lele03g0222 329 SMART finulus 101 152 IPR011598 GO:0046983
Lele03g0222 329 Pfam Helix-loop-helix DNA-binding domain 96 147 IPR011598 GO:0046983
Lele03g0222 329 FunFam Transcription factor SPEECHLESS 87 161 - -
Lele03g0222 329 PANTHER TRANSCRIPTION FACTOR FAMA 15 328 IPR044283 GO:0003700|GO:0010052
Lele03g0222 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 167 IPR036638 GO:0046983
Lele03g0222 329 MobiDBLite consensus disorder prediction 78 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0222 Lele-ChrLele03 1207276 1209350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0222 1 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 50.700 9.80e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele03g0222 HLH 6e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0222 03 1207276 1209350 Lele03g0222 03 1207276 1209350 ECH
Lele01g0216 01 1230733 1232827 Lele03g0222 03 1207276 1209350 hybridization
Lele02g0214 02 1186111 1188331 Lele03g0222 03 1207276 1209350 hybridization