Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0203 ATGATTTTGATTACTGGGTATTTCATATATCCATCACTTGTGGGAGATTTCGGTGACTGGATGGACTTGGATAACATTGAGTGTGTGTCATCCTCGGATGGTATTGATGAGGACGAGATCCCCCATCATGGTATACATCCTCTCCCCCATCAACACTCTGAGTTTTCATCCTCAAAGCCTCGCAATGGCGCCACCAATATGGGCCCCACGGCCATTGCTCCGGCAACCAGCGTCCATGAGTTGCTGGAATGCCCTGTCTGTACCAATTCTATGTACCCACCAATTCATCAGTGTCACAATGGGCACACCCTATGTTCAACATGTAAAACAAGGGTGCACAACCGATGCCCCACATGCAGACAAGAGCTTGGAGATATTAGATGTTTGGCTCTGGAGAAGGTAGCTGAATCACTTGAGTTACCATGCAAATACTATTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGACAGTGTGCAGTTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGTTCAGTTGTTGGGGACATCCCTTTCCTCGTTGCGCATCTGAGGGACGATCATAAGGTGGACATGCACACAGGATGTACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGGCAATACTTTTGCCTTCATTTTGAGGCTTTCCAGCTTGGGATGGCCCCTGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAATGAAGCTCGAAACTATAGCTATAGCCTAGAAGTTGGGGCAAACGGCAGGAAACTGATTTGGGAGGGTACTCCAAGAAGCATCCGGGATAGCCATCGTAAAGTCAGGGATAGTCATGACGGTCTGATCATCCAACGAAATATGGCCCTTTTTTTCTCTGGTGCGGACAGGAAGGAGCTTAAGCTCAGAGTTACCGGAAGAATATGGAAAGAACAACAGAATCCAGATGCTGGGGTGTGCATACCGAATCTTTATAGCTGA 1041 0.464 MILITGYFIYPSLVGDFGDWMDLDNIECVSSSDGIDEDEIPHHGIHPLPHQHSEFSSSKPRNGATNMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCSFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGADRKELKLRVTGRIWKEQQNPDAGVCIPNLYS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0203 346 SUPERFAMILY TRAF domain-like 137 329 - -
Lele03g0203 346 FunFam E3 ubiquitin-protein ligase SINAT5-like 193 325 - -
Lele03g0203 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 136 IPR013083 -
Lele03g0203 346 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 191 325 IPR008974 GO:0005515
Lele03g0203 346 SUPERFAMILY RING/U-box 74 126 - -
Lele03g0203 346 Pfam Seven in absentia protein family 126 325 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele03g0203 346 ProSiteProfiles Zinc finger RING-type profile. 84 120 IPR001841 -
Lele03g0203 346 FunFam E3 ubiquitin-protein ligase SINAT3 136 192 - -
Lele03g0203 346 FunFam E3 ubiquitin-protein ligase SINAT3 31 135 - -
Lele03g0203 346 CDD RING-HC_SIAHs 82 120 - -
Lele03g0203 346 CDD Sina 198 326 - -
Lele03g0203 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 190 IPR013083 -
Lele03g0203 346 ProSiteProfiles Zinc finger SIAH-type profile. 137 197 IPR013010 GO:0008270
Lele03g0203 346 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 63 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0203 Lele-ChrLele03 1077376 1080006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0203 56 332 C3H Transcription Factor Family AT2G41980 77.338 1.49e-163 457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0203 03 1077376 1080006 Lele04g0193 04 1069240 1078544 ECH
Lele03g0203 03 1077376 1080006 Lele03g0203 03 1077376 1080006 ECH
Lele01g0197 01 1103760 1106395 Lele03g0203 03 1077376 1080006 hybridization
Lele02g0196 02 1063588 1066001 Lele03g0203 03 1077376 1080006 hybridization