Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0186 ATGTCGCTCCGACGAAGGACTCACGCGCCGAAGCCGGCATCTAAGTCCCCTTCCATCGGAAAATCGTTCGATTCCGATGACGTTTGCTGCGAAGAATGTGGATCCGGCCACTCGCCAGCCAAGTTGATTCTTTGCGACAAATGTGATCGAGGATGCCACCTCTTCTGCCTCAGACCCATACTTGTTTCGGTGCCTAAAGGGTCTTGGTTCTGCCCCTCTTGCTCTAAAAACAAGAAGCCCAAGTCTTTTCCTCTAGTCCAGACTAAAATTATTGATTTCTTTCGCATTCAACGATCCCCGCAAGCTACTCAAACGTCCAGTCAAGATATCCGAAAGAAACGAAAGCGGGCTACAAGCCTAGTGATGTCAAAAAAGAAACGAAGGCTGCTGCCATTCTGCCCGAGTGAGGATCCTTCAAGGAGATTAGAACAGATGGCATCTCTGGCAACGGCATTAACAGCAACTAATACAGAATTCAGCAATGAGCTTACTTACATGCCTAGAATGGCACCGAGATCAGCTAATCGTGCGTCTCTTGAAAAGGGTGGAATGCAGGTTCTGTCCAAAGAAGATACAGACACCTTGAACTTGTGCAAGAGTATGATGGAAAGAGGAGAATGTCCACCACTCATGGTTGTTTTTGATCCTCAAGAAGGGTTCACTGTTGAGGCAGATAAATGGATAAGAGACTTAACAATAATCACAGAGTATGTCGGAGATGTTGACTATTTGAGGAATCGTGAAAATGATGACGGGGATAGCATGATGACACTTCTTTCCGCTTCTAATGCTTCACAAACGTTAGTAGTCTGTCCGGACAAACGAAGTAACATCGCGCGGTTTATTAACGGCATTAACAATCACACACCGGAAGGGAAGAAAAAGCAGAACTTAAAATGCGTGAGGTTCGACGTCAATGGGAAGTGTCGAGTTCTACTGGTTGCAAACAGAGACATATCAAAGGGGGAGAGATTGTACTATGACTACAACGGAAGCGAGCATGAATATCCAACGGAACACTTCGTATTTCTTTTTCTAGGTATTACTAAACGGCACAGCATGTCAACAGGGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTCGGGTTCAAATCCCCGGTCCCAAAGCTACCTGTCGGATCTTTTTTTTCCCTTCCCTCTAA 1194 0.4631 MSLRRRTHAPKPASKSPSIGKSFDSDDVCCEECGSGHSPAKLILCDKCDRGCHLFCLRPILVSVPKGSWFCPSCSKNKKPKSFPLVQTKIIDFFRIQRSPQATQTSSQDIRKKRKRATSLVMSKKKRRLLPFCPSEDPSRRLEQMASLATALTATNTEFSNELTYMPRMAPRSANRASLEKGGMQVLSKEDTDTLNLCKSMMERGECPPLMVVFDPQEGFTVEADKWIRDLTIITEYVGDVDYLRNRENDDGDSMMTLLSASNASQTLVVCPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGKCRVLLVANRDISKGERLYYDYNGSEHEYPTEHFVFLFLGITKRHSMSTGDPWRNGSASDSRSEGCVFDSRRVQIPGPKATCRIFFFPSL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0186 397 Pfam PHD-finger 30 76 IPR019787 -
Lele03g0186 397 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 103 340 - -
Lele03g0186 397 SMART PHD_3 29 75 IPR001965 -
Lele03g0186 397 SUPERFAMILY FYVE/PHD zinc finger 20 81 IPR011011 -
Lele03g0186 397 MobiDBLite consensus disorder prediction 1 23 - -
Lele03g0186 397 CDD SET_ATXR5_6-like 205 342 - -
Lele03g0186 397 SUPERFAMILY SET domain 200 332 IPR046341 -
Lele03g0186 397 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Lele03g0186 397 MobiDBLite consensus disorder prediction 99 118 - -
Lele03g0186 397 Gene3D SET domain 114 342 IPR046341 -
Lele03g0186 397 FunFam Histone-lysine N-methyltransferase ATXR5 114 342 - -
Lele03g0186 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 91 IPR013083 -
Lele03g0186 397 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
Lele03g0186 397 CDD PHD_RSF1 30 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0186 Lele-ChrLele03 988063 991126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0186 26 91 C2H2 Transcription Factor Family AT3G01460 36.364 5.64e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele03g0186 PHD 2.1e-08 CL0390