Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0172 ATGCAGATCTTCGTCAAAACCTTAACAGGGAAGACCATCACCCTCGAGGTAGAGTCCAGCGATACCATTGATAATGTTAAGGCTAAGATTCAGGACAAGGAAGGTATTCCACCGGACCAGCAAAGATTGATTTTTGCCGGGAAGCAACTGGAGGATGGCCGTACTCTTGCCGATTATAACATCCAGAAAGAGTCGACATTGCATCTTGTTTTGAGGCTTCGTGGTGGTATTATCGAGCCATCTTTGATGGCATTGGCCAGGAAATATAATCAGGACAAGATGATATGCCGCAAGTGTTATGCTCGTTTGCACCCCCGCGCTGTCAACTGCAGGAAGAAGAAATGTGGACACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAACCATAGGGAAGTGCGTGCCACTGCTGTTTGTTTGGACAGAGCAATCAGCATTGATAATCACATGTTTCTGTAG 456 0.4649 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKINHREVRATAVCLDRAISIDNHMFL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0172 151 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Lele03g0172 151 FunFam ubiquitin-60S ribosomal protein L40 79 128 - -
Lele03g0172 151 PANTHER UBIQUITIN 1 92 - -
Lele03g0172 151 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lele03g0172 151 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lele03g0172 151 Pfam Ribosomal L40e family 78 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
Lele03g0172 151 Gene3D - 1 79 - -
Lele03g0172 151 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lele03g0172 151 SUPERFAMILY Zn-binding ribosomal proteins 76 128 IPR011332 GO:0006412
Lele03g0172 151 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lele03g0172 151 SMART ubq_7 1 72 IPR000626 GO:0005515
Lele03g0172 151 Gene3D - 80 128 IPR038587 -
Lele03g0172 151 CDD Ubl_ubiquitin 1 76 - -
Lele03g0172 151 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lele03g0172 151 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lele03g0172 151 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lele03g0172 151 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0172 Lele-ChrLele03 917135 918594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0172 1 127 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.213 8.01e-92 260