LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele03g0171	ATGATGACGGGTGACGAGTATATTCATGCATCAAAGGAACATAATATTGGAAGCTTGCCCGGCTCAAGGCCACCTGAGAATCCGAGAAAGAAGAACAGCATAGAAAACAAGAGGAGGTTTAGTGATGAACAAATTCGATCACTTGAATGCATATTTGAATCAGAATCAAAGCTTGAGCCAAGAAAGAAGATGCAACTAGCGAGAGATCTTGGGTTGCAGCAGCGCCAAGTTACCATATGGTTCCAAAACAGAAGAGCCAGATGGAAATCAAAACACATAGAGCAAGAATACAGGAAACTCAGAGATGAGTATGACAATTTAGCATCTCTGTTTGAGTCCATAAAGAAAAAGGAAGAATCCTTGCAAGCTGAGTTACAAAAGCTAAGAGATTTAGCGGAGACGTGTGATGATGGTGGTAAAAGGGAAAACAGGGTTGGGATGGAAAATAGCACAGAGGATGGTGCTTCAGGCAGCGGACAAAACAACATGAGCGCAAAAGCAAAGCCAAATTTGTCAAATGAAAGTTCAGAGAATGCCAAGAATGATGATATGGGAGAATTGGGATCGATTGAAAATGGTATAGTGTTGATCCAAGTCTCTTGGATCAGTCTTGCAGCAGTTCGCAGTGGTTAG	633	0.4186	MMTGDEYIHASKEHNIGSLPGSRPPENPRKKNSIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQQRQVTIWFQNRRARWKSKHIEQEYRKLRDEYDNLASLFESIKKKEESLQAELQKLRDLAETCDDGGKRENRVGMENSTEDGASGSGQNNMSAKAKPNLSNESSENAKNDDMGELGSIENGIVLIQVSWISLAAVRSG	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele03g0171	210	CDD	homeodomain	37	92	IPR001356	GO:0003677
	Lele03g0171	210	PRINTS	Lambda-repressor HTH signature	62	71	IPR000047	GO:0003677
	Lele03g0171	210	PRINTS	Lambda-repressor HTH signature	71	87	IPR000047	GO:0003677
	Lele03g0171	210	FunFam	Homeobox-leucine zipper protein ATHB-7	21	91	-	-
	Lele03g0171	210	SUPERFAMILY	Homeodomain-like	20	91	IPR009057	-
	Lele03g0171	210	ProSiteProfiles	'Homeobox' domain profile.	31	91	IPR001356	GO:0003677
	Lele03g0171	210	MobiDBLite	consensus disorder prediction	149	178	-	-
	Lele03g0171	210	Pfam	Homeodomain	37	89	IPR001356	GO:0003677
	Lele03g0171	210	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	30	173	IPR045224	GO:0003700
	Lele03g0171	210	SMART	HOX_1	34	95	IPR001356	GO:0003677
	Lele03g0171	210	MobiDBLite	consensus disorder prediction	134	184	-	-
	Lele03g0171	210	Pfam	Homeobox associated leucine zipper	91	131	IPR003106	GO:0006355\|GO:0043565
	Lele03g0171	210	MobiDBLite	consensus disorder prediction	1	38	-	-
	Lele03g0171	210	MobiDBLite	consensus disorder prediction	134	148	-	-
	Lele03g0171	210	ProSitePatterns	'Homeobox' domain signature.	66	89	IPR017970	GO:0000981\|GO:0006355
	Lele03g0171	210	Coils	Coil	83	134	-	-
	Lele03g0171	210	Gene3D	-	35	97	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele03g0171	Lele-ChrLele03	915061	915780	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele03g0171	36	124	Homeobox Transcription Factor Family	AT2G46680	70.787	6.64e-39	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele03g0171		Homeodomain	3.3e-17	CL0123