Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0162 ATGTCTCAGCAGAGCCAAAATAAGAGGGTGAGTCCAAACCATGCCAAGCAACTTGGCGACACAACCTATACCAAGATCTTCGTTGGAGGACTTGCCTGGGAGACCAGAAGGGACACTCTGAAACACTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTTATAAACGACAGCAACAGTGGAAGATCAAAGGGCTATGGCTTTGTGACATTCAGGAGCCCAGATTCTGCCATAAGAGCCTGTCAGAATCCCTATCCTATGATTGATGGGAGAAGAGCCAACTGTAATCTTGCAGCTCTTGGTGCACAGAGATTCAATCCATATACAACAGTAGCAGGAAAGGAGAAATTTAGCACAACTTCTCGGCCTATGGTTTCAGTTCCAATTCAAGGAATCTCCTCTTATTACAATCAACACATACCACAGTATGCGTTTCCTTATCCACCATTCAGAACTATTACAATGTCTATGGAGGACAGCAAATTCCCATTTGTTAGCCTTCGGAATTGTTCACAGTCGTCGGCTTATCACAACCCATCTCAGCTTCTCCTTCAATACCCACCGCAGCTTCACCATCTAACCAATGCTACACACACGCACTATCTTCTTCTTGCTCTCTCAACTCTTCCTCGCCTTAAGTACTTTCTTGGAACGGGGGATGCTGCTTCTGCAGCAGGAATGGTCGGAACCTTCCCTGAGCAGAAATCTTGA 714 0.4552 MSQQSQNKRVSPNHAKQLGDTTYTKIFVGGLAWETRRDTLKHYFEQFGEILEAVVINDSNSGRSKGYGFVTFRSPDSAIRACQNPYPMIDGRRANCNLAALGAQRFNPYTTVAGKEKFSTTSRPMVSVPIQGISSYYNQHIPQYAFPYPPFRTITMSMEDSKFPFVSLRNCSQSSAYHNPSQLLLQYPPQLHHLTNATHTHYLLLALSTLPRLKYFLGTGDAASAAGMVGTFPEQKS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0162 237 PANTHER BOULE-RELATED 10 192 IPR037366 -
Lele03g0162 237 CDD RRM_RBM24_RBM38_like 24 99 - -
Lele03g0162 237 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Lele03g0162 237 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 84 IPR000504 GO:0003723
Lele03g0162 237 SMART rrm1_1 25 97 IPR000504 GO:0003723
Lele03g0162 237 Gene3D - 1 110 IPR012677 -
Lele03g0162 237 SUPERFAMILY RNA-binding domain, RBD 15 99 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0162 Lele-ChrLele03 867813 869201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0162 20 100 C2H2 Transcription Factor Family AT2G19380 41.975 3.53e-15 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0162 03 867813 869201 Lele44g0270 44 1948414 1950290 ECH
Lele03g0162 03 867813 869201 Lele03g0162 03 867813 869201 ECH
Lele01g0154 01 892205 893528 Lele03g0162 03 867813 869201 hybridization
Lele02g0160 02 884442 885897 Lele03g0162 03 867813 869201 hybridization