Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele03g0161 | ATGTTCACTTTATTTAGTGAAGAGAATTTTAAACAGGCCAAAAGATCAGCTCTTTTCCCTTTGGTATTTATTATGGCGGTAGCTGAGAATGCCGGAGCCATAATCGGTTCATCCAGTCAAAATTTAGATAACTGTGTAGTATCATCGGACTCAACTGTGACAAATGAACTCGAGAAATCGAAACCCCGAACTGGGGCTACTGTAAATGGTTTAGAAACAGATGTTCAACCTGTCAACGGCGATCAGAGTCTGAATGATGTGTTCGGTCATCAGGATAGAGCTCCGTCGGTTCCTAACGGCAATTACAAGTCTCAAATCACTCAGATGAGAAATGGGTTCGAGGCAAATGGGGTTCAGAACCAGCAGATGGTGCTAAATAATAGCGGATACGGAATTAAGCAAATGTCTAACGGTGTAAGGAACGGTGAAGATGGTGGCGAGAGTTTCAAGCGTGATATGAGGGATTTGGCAGAGTTGTTGTCGAAGTTGAATCCCATGGCCGAGGAATTTGTACCACCATCACTTGCCAATAATCACGGATTCTTAGGCGGTGCTGGGTTTGGCTACCCTAACAACTTTCTACCCCACACTAATTATGGCAATGCAAATGGACATACTAACCGAAGGAGGAAGAATGGATATAATCAAGGGAAGCGAAGAGCTAATAATAAAATGGAAATGGAGAAGAGAGAAGAGATGATTAAGAAGACTGTTTATGTTTCTGACATTGATCAACAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGACAGGTTGTTGATTGCCGAGTATGCGGGGATCCTAATTCCATACTTCGTTTTGCCTTCATCGAGTTCACGGATGAAGAAGGTGCGAGGGCTGCTTTGAACCTGTCTGGCACCATGCTTGGATATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCTATCGCACCAGTTAACCCCTCATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCGAGAACAATTTATTGCACAAATATTGACAAGAAGGTTACCCAAGCAGATGTTAAACTTTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCACTCAACTCGAATCGCATTTGTTGAGTTCACTATGGCTGAAAGTGCAATTGCAGCTCTGAACTGCAGTGGTGTGATTTTGGGTTCGCTGCCTATCAGGGTAAGTCCATCAAAGACACCTGTGCAGTCTCGCGCACCACGTGGGTCAATGCACTAA | 1266 | 0.4439 | MFTLFSEENFKQAKRSALFPLVFIMAVAENAGAIIGSSSQNLDNCVVSSDSTVTNELEKSKPRTGATVNGLETDVQPVNGDQSLNDVFGHQDRAPSVPNGNYKSQITQMRNGFEANGVQNQQMVLNNSGYGIKQMSNGVRNGEDGGESFKRDMRDLAELLSKLNPMAEEFVPPSLANNHGFLGGAGFGYPNNFLPHTNYGNANGHTNRRRKNGYNQGKRRANNKMEMEKREEMIKKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVQSRAPRGSMH | 421 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele03g0161 | 421 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 335 | 402 | IPR000504 | GO:0003723 | |
Lele03g0161 | 421 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 238 | 300 | IPR000504 | GO:0003723 | |
Lele03g0161 | 421 | FunFam | Polyadenylate-binding protein-interacting protein 11 | 199 | 313 | - | - | |
Lele03g0161 | 421 | SUPERFAMILY | RNA-binding domain, RBD | 322 | 415 | IPR035979 | GO:0003676 | |
Lele03g0161 | 421 | MobiDBLite | consensus disorder prediction | 199 | 227 | - | - | |
Lele03g0161 | 421 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 236 | 311 | IPR000504 | GO:0003723 | |
Lele03g0161 | 421 | SUPERFAMILY | RNA-binding domain, RBD | 212 | 312 | IPR035979 | GO:0003676 | |
Lele03g0161 | 421 | CDD | RRM1_CID8_like | 234 | 313 | IPR034823 | - | |
Lele03g0161 | 421 | FunFam | Polyadenylate-binding protein-interacting protein 10 | 327 | 405 | - | - | |
Lele03g0161 | 421 | Pfam | Ataxin-2 C-terminal region | 160 | 174 | IPR009818 | - | |
Lele03g0161 | 421 | SMART | rrm1_1 | 334 | 405 | IPR000504 | GO:0003723 | |
Lele03g0161 | 421 | SMART | rrm1_1 | 237 | 307 | IPR000504 | GO:0003723 | |
Lele03g0161 | 421 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 333 | 409 | IPR000504 | GO:0003723 | |
Lele03g0161 | 421 | CDD | RRM2_CID8_like | 329 | 410 | IPR034825 | - | |
Lele03g0161 | 421 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR | 158 | 414 | - | - | |
Lele03g0161 | 421 | Gene3D | - | 319 | 416 | IPR012677 | - | |
Lele03g0161 | 421 | Gene3D | - | 197 | 313 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele03g0161 | Lele-ChrLele03 | 860787 | 866119 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele03g0161 | 238 | 404 | Eukaryotic Initiation Factors Gene Family | AT1G34140 | 25.146 | 1.12e-10 | 61.2 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele03g0161 | 03 | 860787 | 866119 | Lele04g0156 | 04 | 882448 | 886146 | ECH | |
Lele03g0161 | 03 | 860787 | 866119 | Lele03g0161 | 03 | 860787 | 866119 | ECH | |
Lele01g0153 | 01 | 885968 | 889928 | Lele03g0161 | 03 | 860787 | 866119 | hybridization | |
Lele02g0159 | 02 | 879327 | 883381 | Lele03g0161 | 03 | 860787 | 866119 | hybridization |