Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0161 ATGTTCACTTTATTTAGTGAAGAGAATTTTAAACAGGCCAAAAGATCAGCTCTTTTCCCTTTGGTATTTATTATGGCGGTAGCTGAGAATGCCGGAGCCATAATCGGTTCATCCAGTCAAAATTTAGATAACTGTGTAGTATCATCGGACTCAACTGTGACAAATGAACTCGAGAAATCGAAACCCCGAACTGGGGCTACTGTAAATGGTTTAGAAACAGATGTTCAACCTGTCAACGGCGATCAGAGTCTGAATGATGTGTTCGGTCATCAGGATAGAGCTCCGTCGGTTCCTAACGGCAATTACAAGTCTCAAATCACTCAGATGAGAAATGGGTTCGAGGCAAATGGGGTTCAGAACCAGCAGATGGTGCTAAATAATAGCGGATACGGAATTAAGCAAATGTCTAACGGTGTAAGGAACGGTGAAGATGGTGGCGAGAGTTTCAAGCGTGATATGAGGGATTTGGCAGAGTTGTTGTCGAAGTTGAATCCCATGGCCGAGGAATTTGTACCACCATCACTTGCCAATAATCACGGATTCTTAGGCGGTGCTGGGTTTGGCTACCCTAACAACTTTCTACCCCACACTAATTATGGCAATGCAAATGGACATACTAACCGAAGGAGGAAGAATGGATATAATCAAGGGAAGCGAAGAGCTAATAATAAAATGGAAATGGAGAAGAGAGAAGAGATGATTAAGAAGACTGTTTATGTTTCTGACATTGATCAACAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGACAGGTTGTTGATTGCCGAGTATGCGGGGATCCTAATTCCATACTTCGTTTTGCCTTCATCGAGTTCACGGATGAAGAAGGTGCGAGGGCTGCTTTGAACCTGTCTGGCACCATGCTTGGATATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCTATCGCACCAGTTAACCCCTCATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCGAGAACAATTTATTGCACAAATATTGACAAGAAGGTTACCCAAGCAGATGTTAAACTTTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCACTCAACTCGAATCGCATTTGTTGAGTTCACTATGGCTGAAAGTGCAATTGCAGCTCTGAACTGCAGTGGTGTGATTTTGGGTTCGCTGCCTATCAGGGTAAGTCCATCAAAGACACCTGTGCAGTCTCGCGCACCACGTGGGTCAATGCACTAA 1266 0.4439 MFTLFSEENFKQAKRSALFPLVFIMAVAENAGAIIGSSSQNLDNCVVSSDSTVTNELEKSKPRTGATVNGLETDVQPVNGDQSLNDVFGHQDRAPSVPNGNYKSQITQMRNGFEANGVQNQQMVLNNSGYGIKQMSNGVRNGEDGGESFKRDMRDLAELLSKLNPMAEEFVPPSLANNHGFLGGAGFGYPNNFLPHTNYGNANGHTNRRRKNGYNQGKRRANNKMEMEKREEMIKKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVQSRAPRGSMH 421
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0161 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 335 402 IPR000504 GO:0003723
Lele03g0161 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 300 IPR000504 GO:0003723
Lele03g0161 421 FunFam Polyadenylate-binding protein-interacting protein 11 199 313 - -
Lele03g0161 421 SUPERFAMILY RNA-binding domain, RBD 322 415 IPR035979 GO:0003676
Lele03g0161 421 MobiDBLite consensus disorder prediction 199 227 - -
Lele03g0161 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 311 IPR000504 GO:0003723
Lele03g0161 421 SUPERFAMILY RNA-binding domain, RBD 212 312 IPR035979 GO:0003676
Lele03g0161 421 CDD RRM1_CID8_like 234 313 IPR034823 -
Lele03g0161 421 FunFam Polyadenylate-binding protein-interacting protein 10 327 405 - -
Lele03g0161 421 Pfam Ataxin-2 C-terminal region 160 174 IPR009818 -
Lele03g0161 421 SMART rrm1_1 334 405 IPR000504 GO:0003723
Lele03g0161 421 SMART rrm1_1 237 307 IPR000504 GO:0003723
Lele03g0161 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 333 409 IPR000504 GO:0003723
Lele03g0161 421 CDD RRM2_CID8_like 329 410 IPR034825 -
Lele03g0161 421 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 158 414 - -
Lele03g0161 421 Gene3D - 319 416 IPR012677 -
Lele03g0161 421 Gene3D - 197 313 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele03g0161 Lele-ChrLele03 860787 866119 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0161 238 404 Eukaryotic Initiation Factors Gene Family AT1G34140 25.146 1.12e-10 61.2
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0161 03 860787 866119 Lele04g0156 04 882448 886146 ECH
Lele03g0161 03 860787 866119 Lele03g0161 03 860787 866119 ECH
Lele01g0153 01 885968 889928 Lele03g0161 03 860787 866119 hybridization
Lele02g0159 02 879327 883381 Lele03g0161 03 860787 866119 hybridization