LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele03g0161	ATGTTCACTTTATTTAGTGAAGAGAATTTTAAACAGGCCAAAAGATCAGCTCTTTTCCCTTTGGTATTTATTATGGCGGTAGCTGAGAATGCCGGAGCCATAATCGGTTCATCCAGTCAAAATTTAGATAACTGTGTAGTATCATCGGACTCAACTGTGACAAATGAACTCGAGAAATCGAAACCCCGAACTGGGGCTACTGTAAATGGTTTAGAAACAGATGTTCAACCTGTCAACGGCGATCAGAGTCTGAATGATGTGTTCGGTCATCAGGATAGAGCTCCGTCGGTTCCTAACGGCAATTACAAGTCTCAAATCACTCAGATGAGAAATGGGTTCGAGGCAAATGGGGTTCAGAACCAGCAGATGGTGCTAAATAATAGCGGATACGGAATTAAGCAAATGTCTAACGGTGTAAGGAACGGTGAAGATGGTGGCGAGAGTTTCAAGCGTGATATGAGGGATTTGGCAGAGTTGTTGTCGAAGTTGAATCCCATGGCCGAGGAATTTGTACCACCATCACTTGCCAATAATCACGGATTCTTAGGCGGTGCTGGGTTTGGCTACCCTAACAACTTTCTACCCCACACTAATTATGGCAATGCAAATGGACATACTAACCGAAGGAGGAAGAATGGATATAATCAAGGGAAGCGAAGAGCTAATAATAAAATGGAAATGGAGAAGAGAGAAGAGATGATTAAGAAGACTGTTTATGTTTCTGACATTGATCAACAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGACAGGTTGTTGATTGCCGAGTATGCGGGGATCCTAATTCCATACTTCGTTTTGCCTTCATCGAGTTCACGGATGAAGAAGGTGCGAGGGCTGCTTTGAACCTGTCTGGCACCATGCTTGGATATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCTATCGCACCAGTTAACCCCTCATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCGAGAACAATTTATTGCACAAATATTGACAAGAAGGTTACCCAAGCAGATGTTAAACTTTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCACTCAACTCGAATCGCATTTGTTGAGTTCACTATGGCTGAAAGTGCAATTGCAGCTCTGAACTGCAGTGGTGTGATTTTGGGTTCGCTGCCTATCAGGGTAAGTCCATCAAAGACACCTGTGCAGTCTCGCGCACCACGTGGGTCAATGCACTAA	1266	0.4439	MFTLFSEENFKQAKRSALFPLVFIMAVAENAGAIIGSSSQNLDNCVVSSDSTVTNELEKSKPRTGATVNGLETDVQPVNGDQSLNDVFGHQDRAPSVPNGNYKSQITQMRNGFEANGVQNQQMVLNNSGYGIKQMSNGVRNGEDGGESFKRDMRDLAELLSKLNPMAEEFVPPSLANNHGFLGGAGFGYPNNFLPHTNYGNANGHTNRRRKNGYNQGKRRANNKMEMEKREEMIKKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVQSRAPRGSMH	421

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele03g0161	421	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	335	402	IPR000504	GO:0003723
	Lele03g0161	421	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	238	300	IPR000504	GO:0003723
	Lele03g0161	421	FunFam	Polyadenylate-binding protein-interacting protein 11	199	313	-	-
	Lele03g0161	421	SUPERFAMILY	RNA-binding domain, RBD	322	415	IPR035979	GO:0003676
	Lele03g0161	421	MobiDBLite	consensus disorder prediction	199	227	-	-
	Lele03g0161	421	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	236	311	IPR000504	GO:0003723
	Lele03g0161	421	SUPERFAMILY	RNA-binding domain, RBD	212	312	IPR035979	GO:0003676
	Lele03g0161	421	CDD	RRM1_CID8_like	234	313	IPR034823	-
	Lele03g0161	421	FunFam	Polyadenylate-binding protein-interacting protein 10	327	405	-	-
	Lele03g0161	421	Pfam	Ataxin-2 C-terminal region	160	174	IPR009818	-
	Lele03g0161	421	SMART	rrm1_1	334	405	IPR000504	GO:0003723
	Lele03g0161	421	SMART	rrm1_1	237	307	IPR000504	GO:0003723
	Lele03g0161	421	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	333	409	IPR000504	GO:0003723
	Lele03g0161	421	CDD	RRM2_CID8_like	329	410	IPR034825	-
	Lele03g0161	421	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	158	414	-	-
	Lele03g0161	421	Gene3D	-	319	416	IPR012677	-
	Lele03g0161	421	Gene3D	-	197	313	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele03g0161	Lele-ChrLele03	860787	866119	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele03g0161	238	404	Eukaryotic Initiation Factors Gene Family	AT1G34140	25.146	1.12e-10	61.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele03g0161	03	860787	866119	Lele04g0156	04	882448	886146	ECH
	Lele03g0161	03	860787	866119	Lele03g0161	03	860787	866119	ECH
	Lele01g0153	01	885968	889928	Lele03g0161	03	860787	866119	hybridization
	Lele02g0159	02	879327	883381	Lele03g0161	03	860787	866119	hybridization