Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0156 ATGGGTGATTTGAAAGCGGTGGAAGCGAGGGAGAGCGAGAAGGAGAGGGAGAAAACAGAGGATGAAGAGGAAAGTGGAACAGAGAGTAAAGGGGGTGAATTGAGTGGTCTGATGAGGTGGGAGAAGTTCTTGCCCAAGATGATATTGAGGGTTCTCTTGGTTGAAGCTGATGATTCCACTCGCCAGATTATCGCTGCGCTTCTCAGGAAATGCAGCTATAGAGTGGCTGCTGTTCCTGATGGCCTAAAAGCTTGGGAAATACTGAAGGGAAGATCACACAACATCGATCTAATACTGACAGAAGTAGATTTGCCTTCCATATCTGGCTATGCGCTTCTCACCTTAATTATGGAGCATGAGATTTGCAAAAGCATTCCTGTTATAATGATGTCCTCACAAGATTCAATTAGCACAGTATACAAGTGCATGTTGAAAGGTGCTGCTGACTATCTTGTTAAGCCCATTAGGAAAAATGAGCTGAGGAATTTGTGGCAGCATGTTTGGAGAAGGCGATCATCAGTAATCGGTTTAAATGGTCTTCAAGATGAGAGGGTTGCGCAACAGAAGGTTGAAGCCACGGCCGAAAATAATGCTGCTAGTCGTTCAAGTGGAGATGCCGCATGCATTAAAAAAAATAGGGAATTAATTGAGAAAGGAAGTGATGCTCAGAGCTCCTGTACAAAGCCTGATTTGGAAGCTGAAAGTGCCCCTATGGAAAATGTTGAGCAATTTGCTCATCTAAGATGTGGTGACTCGAATCCGAGCTATGAAAAGATTCAGGAGGTTAAAGCTTGTTTTCGTTTAGGCCACACATCGATTGTGCATGATAATCATGCTGGAGGATCAACTGTGGATATCCGCGCAAATGGTAACACAAGCACAACTCATGGCACGGATGGCTGTCCAGTGAATAGGAGTGCTAGTATCAGTGTTGAAGCTCATGATAATCACTATGTTCAAATTAGCTCTTCCAAGGAAGCTATAGACTTGATTGGAGCATTTCATGCTAATTCAAAATGCAGTCCCAAAAGTTCCGCAATCAATTGCGCGGGCATGTTTGACTTCTCTCCACATTTAGATCTTTCCTTAAGAAGAGATCATCCCAGCAGCTTTGAGAATGAAGTCTCCAAAGATAGGCAAACCCTCACGCATTCCAATGCTTCAGCTTTCAAACGGTATACCAGCAGACAATTGCAAGCACCACCAGTTGGTCTCATTAACTTTTGTGATCCAGAGAGAGAACAGAGAACAAATTGTGAGAAAAATAACTCTTATGTTGCTGCTGGCTATAACTCAGATAGTTCAACACCGAGTATGCAAAGAAGTATTGTGTCACCCACTACACCCCAATCTAGAGAATCTAAACTTGCAACTTCATTCTCCCAGCAGCCAAGTCCTCTCCCGATTCCAGTTAGAGGAATAAGGTTCAACGATCTATGCAGATCCTATGGTTCTGTCCCTCCTCGAATGTTTTGTACAGAGTCAGATCCACCAACAGGGCCAAGTCCAAGATCTGCAGTGCACCTGGAATCTACCTTTCAAACCAATGCATATTGTCTGTCTAATGTCAAAGAAAATAGTTCAGAGCAGCTTTATGAAGCTCGAGGTCAAAGTGGAAACAACCTTGCAAGCCACATTGTTTATGTGCAGGATCACGAGTTGGAAAATGTGGAAGATCGAGGACATATTTCTCCTGCAACTGATCAAAGTGGAAGCAGTAGCTTCTGCAATGGAAATTTGAGTCGCATGAACAGCATTGGCTACGGAAGCAACTGTGGAAGTAACAGCAACGTTGATCAGGCTGTCATAGTCAGGACCGCTTCAGAGGTGAAGAATGAAGACCTCACAAACAATGCAAATTCTCATCGATCCATTCAAAGAGAAGCAGCTCTAAACAAGTTCCGTTTGAAAAGGAAACAGAGATGTTATGAGAAGAAGGTTCGTTATGAAAGCAGAAAGAAACTTGCAGAGCATCGTCCTAGGGTGAAAGGACAATTTGTTCGTCAAGTGCAACCTGAACCTCAGGCTGCAGATAGAGATGGCTGA 2046 0.436 MGDLKAVEARESEKEREKTEDEEESGTESKGGELSGLMRWEKFLPKMILRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEILKGRSHNIDLILTEVDLPSISGYALLTLIMEHEICKSIPVIMMSSQDSISTVYKCMLKGAADYLVKPIRKNELRNLWQHVWRRRSSVIGLNGLQDERVAQQKVEATAENNAASRSSGDAACIKKNRELIEKGSDAQSSCTKPDLEAESAPMENVEQFAHLRCGDSNPSYEKIQEVKACFRLGHTSIVHDNHAGGSTVDIRANGNTSTTHGTDGCPVNRSASISVEAHDNHYVQISSSKEAIDLIGAFHANSKCSPKSSAINCAGMFDFSPHLDLSLRRDHPSSFENEVSKDRQTLTHSNASAFKRYTSRQLQAPPVGLINFCDPEREQRTNCEKNNSYVAAGYNSDSSTPSMQRSIVSPTTPQSRESKLATSFSQQPSPLPIPVRGIRFNDLCRSYGSVPPRMFCTESDPPTGPSPRSAVHLESTFQTNAYCLSNVKENSSEQLYEARGQSGNNLASHIVYVQDHELENVEDRGHISPATDQSGSSSFCNGNLSRMNSIGYGSNCGSNSNVDQAVIVRTASEVKNEDLTNNANSHRSIQREAALNKFRLKRKQRCYEKKVRYESRKKLAEHRPRVKGQFVRQVQPEPQAADRDG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0156 681 ProSiteProfiles Response regulatory domain profile. 50 168 IPR001789 GO:0000160
Lele03g0156 681 MobiDBLite consensus disorder prediction 1 33 - -
Lele03g0156 681 PANTHER TWO-COMPONENT RESPONSE REGULATOR 50 236 IPR045279 GO:0009736
Lele03g0156 681 Pfam CCT motif 627 669 IPR010402 GO:0005515
Lele03g0156 681 SUPERFAMILY CheY-like 49 181 IPR011006 -
Lele03g0156 681 Gene3D - 47 274 - -
Lele03g0156 681 Pfam Response regulator receiver domain 51 162 IPR001789 GO:0000160
Lele03g0156 681 Coils Coil 4 24 - -
Lele03g0156 681 MobiDBLite consensus disorder prediction 1 29 - -
Lele03g0156 681 SMART REC_2 49 164 IPR001789 GO:0000160
Lele03g0156 681 MobiDBLite consensus disorder prediction 430 464 - -
Lele03g0156 681 ProSiteProfiles CCT domain profile. 627 669 IPR010402 GO:0005515
Lele03g0156 681 CDD psREC_PRR 51 154 - -
Lele03g0156 681 MobiDBLite consensus disorder prediction 652 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0156 Lele-ChrLele03 842192 846888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0156 322 671 Response Regulator Gene Family AT5G24470 30.579 3.75e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele03g0156 Response_reg 1.7e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0156 03 842192 846888 Lele44g0274 44 1985351 1990431 ECH
Lele03g0156 03 842192 846888 Lele03g0156 03 842192 846888 ECH
Lele01g0148 01 860352 865015 Lele03g0156 03 842192 846888 hybridization
Lele02g0153 02 844555 848735 Lele03g0156 03 842192 846888 hybridization