Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0145 ATGGATCATAAAAGTGACCATGTGGCTGTCAAGGAGATGCCCACCATGACACTTTCAGGTAGGCATCGCCCTCAAGTGTTGACAATAAATCGTAAACTTACAGCACCAGCTCGTCACGTTTGCTCTCTCATCCCAATAACGGTTTTTGGTTGCTCAGAGAGAGTACAGGGAGAAGGCCGAGAAGAAACAGCGCCGAAGATGAAAACAATTTTGTCTTCTGAAACAATGGACATCCCCGATGGGGTGTCCATCAAAGTGAAGGCTAAGATCATCGAGGTAGAGGGACCTCGCGGCAAGCTTGTCCGTGATTTTAAGCACTTGAACATCGATTTTCAACTTATCACCGACGAGGAGGGCAAGAGAAAGCTTAAGGTCGATGCCTGGTTTGGATCCAGGAAAACCTCTGCTTCCATTCGCACGGCCCTCAGTCACGTAGAAAATCTCATCACCGGCGTCACAAAGGGTTACCGCTATAAGATGAGGTTTGTCTATGCGCATTTTCCTATTAACGCCAGCATTACCAACAGCAACAGGTCCATTGAGATCCGAAACTTCCTTGGCGAGAAAAAGGTGAGGAAGGTGGATATGCTTGAGGGAGTTTCAATTTTACGATCTGAAAAGGTTAAGGATGAGTTGGTATTGGATGGAAATGATATTGAGCTGGTTTCTCGTTCTGCCGCCCTCATCAATCAGAAATGCCATGTCAAGAACAAAGATATTCGGAAGTTTCTTGATGGTATTTACGTTAGCGAGAAGGGAACAATCCTTGAAGAATAG 777 0.4569 MDHKSDHVAVKEMPTMTLSGRHRPQVLTINRKLTAPARHVCSLIPITVFGCSERVQGEGREETAPKMKTILSSETMDIPDGVSIKVKAKIIEVEGPRGKLVRDFKHLNIDFQLITDEEGKRKLKVDAWFGSRKTSASIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNRSIEIRNFLGEKKVRKVDMLEGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTILEE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0145 258 ProSitePatterns Ribosomal protein L6 signature 2. 231 252 IPR002359 GO:0003735|GO:0005840|GO:0006412
Lele03g0145 258 Gene3D - 67 155 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele03g0145 258 FunFam 60S ribosomal protein L9 67 155 - -
Lele03g0145 258 SUPERFAMILY Ribosomal protein L6 156 252 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele03g0145 258 FunFam 60S ribosomal protein L9 156 258 - -
Lele03g0145 258 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 67 256 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele03g0145 258 Gene3D - 156 258 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele03g0145 258 SUPERFAMILY Ribosomal protein L6 67 155 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele03g0145 258 Pfam Ribosomal protein L6 167 246 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele03g0145 258 Pfam Ribosomal protein L6 78 155 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0145 Lele-ChrLele03 776023 777823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0145 67 258 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 83.938 1.49e-117 332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0145 03 776023 777823 Lele26g1048 26 6780426 6784664 CCT
Lele03g0145 03 776023 777823 Lele28g1039 28 6734758 6741752 CCT
Lele03g0145 03 776023 777823 Lele03g0145 03 776023 777823 ECH
Lele01g0138 01 812740 813890 Lele03g0145 03 776023 777823 hybridization
Lele02g0138 02 787553 788681 Lele03g0145 03 776023 777823 hybridization