Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0121 ATGGAAACATCGGGTGCTAGTTCAGAACAATACGCCATTTCTTCTTCCTCCTCATCTTCCACTGTTGGTGCAAATAATAGTAACAGTAATAGCAGTGCCGTTACTGAACCCTGGTACGGGATGAGCTTAGCCCCTGTCACCCCTCTCCGTTCTCCAGTCTCTTTTCTGCTAAATTACGCGGGCATTCTCCGCTCAAGTTCGTCAGCTCGCGATTCAGAGGCCGTGATAGTCAACAGCGGAGTTACCACTTCGGAAATACGCTCTCAGCGTTCCGAGTCTGGCGCCGCGTGCGGTGGCAGTGCTGGTGAAGTTTCAATACGGATCATCGGGGCTGCAGAACATGAACAGGGTGTTGCGTTAGGTTCTTTTTCTACTCCCTCTCTGAACCAGCTTGGACAAGTCGATCATGATGATGTGATGGGAAATAGAGGAGGGATGCCCGCATTGGATGGCGATGCGGAGGGTCGCGGTGAAAGAGTCCCCCTAGTGTCTTCGACCACACCGGCCACTAGTGGACATGTGGATGAAAATGTCGGGAATGCCTCGGAAAGCAACAATGGGGATTCATCCTCTTACCAGAGGTATGATATTCAGCAGGCTGCTAAGTGGATTGAGCAGATTCTTCCTTTCTCACTGTTGCTATTGGTTGTTTTTATTCGTCAGCATTTGCAAGGTTTTTTTGTCACGATTTGGATTTCAGCTGTGATGTTCAAATCAAATGAAATTGTTAAGAGGCAGACAGCGCTAAAGGGGGATAGGAAAGTCTCAATTCTTGTCAGTATTTCTCTCGCCTTCATCCTTCATGTGATGTGCATTTACTGGTGGTATCGAAGTGATGATCTTTTATACCCACTGATCATGGTTCCTCCAAAATCAGCACCTCCCTTCTGGCATGCTATATTCATCATCTTGGTTAATGATACACTGGTGCGGCACGTAGCAATGGCTTTCAAGTGTTTGCTGCTGATATATTACAAAAATGGAAGAGGTCATAACTTCCGCCGGCAGGGCCAAATGTTAACTCTGGCTGAGTACTCATTGCTGTTGTATCGTGCCTTGTTGCCTACATCAGTTTGGTACCGTTTTTTCTTAAACAAGGATTATGGGAGTCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACATCTGTTATTGAGAAGGTTCAATGCTTCTGTTTTGCCTTAAAAGCATTATCAAGAAAGGAAGTTCATTATGGAATTTATGCCACAATGGAACAGGTAAATGCTGCTGGGGACCTATGTGCTATATGCCAAGAGAAGATGCATGCTCCAGTTTTGTTGCGCTGCAAACACATTTTCTGTGAGGAGTGCGTATCAGAATGGTTTGAGAGAGAACGGACTTGCCCGCTATGCAGAGCATTGGTAAAACCTGCTGACCTGCGGACCTTTGGGGATGGATCGACAAGTCTAATTCTCCAGCTGTTTTAG 1461 0.4586 METSGASSEQYAISSSSSSSTVGANNSNSNSSAVTEPWYGMSLAPVTPLRSPVSFLLNYAGILRSSSSARDSEAVIVNSGVTTSEIRSQRSESGAACGGSAGEVSIRIIGAAEHEQGVALGSFSTPSLNQLGQVDHDDVMGNRGGMPALDGDAEGRGERVPLVSSTTPATSGHVDENVGNASESNNGDSSSYQRYDIQQAAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKRQTALKGDRKVSILVSISLAFILHVMCIYWWYRSDDLLYPLIMVPPKSAPPFWHAIFIILVNDTLVRHVAMAFKCLLLIYYKNGRGHNFRRQGQMLTLAEYSLLLYRALLPTSVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVIEKVQCFCFALKALSRKEVHYGIYATMEQVNAAGDLCAICQEKMHAPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLILQLF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0121 486 SUPERFAMILY RING/U-box 415 468 - -
Lele03g0121 486 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 26 486 IPR044235 GO:0061630|GO:1904294
Lele03g0121 486 SMART ring_2 425 462 IPR001841 -
Lele03g0121 486 ProSiteProfiles Zinc finger RING-type profile. 425 463 IPR001841 -
Lele03g0121 486 MobiDBLite consensus disorder prediction 131 190 - -
Lele03g0121 486 MobiDBLite consensus disorder prediction 163 190 - -
Lele03g0121 486 CDD RING-HC_RNFT1_like 424 463 - -
Lele03g0121 486 ProSitePatterns Zinc finger RING-type signature. 440 449 IPR017907 -
Lele03g0121 486 MobiDBLite consensus disorder prediction 1 31 - -
Lele03g0121 486 Pfam Zinc finger, C3HC4 type (RING finger) 423 466 - -
Lele03g0121 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 473 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0121 Lele-ChrLele03 680035 685017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0121 49 486 C3H Transcription Factor Family AT5G01960 62.187 0.0 560
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0121 01 706913 711944 Lele03g0121 03 680035 685017 hybridization
Lele02g0119 02 693315 698386 Lele03g0121 03 680035 685017 hybridization