Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0119 ATGGGGAGGAAGTCTTTTGGCATTTTTCTTGATGGAAGACCTGCAAGGTGTTATCGTCAAATAAAAAACAAGCCTTACCCTAAATCACGCTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAGTTTCCTTTCTGCGTCCATCTTGTTAGCTGGGAGAAGGAAAATGTTTCAAGTGAAGCACTGGAAGCTGCTAGGATTGCTTGCAACAAATATATGGCCAAATTTGCTGGAAAGGATGCCTTCCATTTGAGAGTTAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCCGGAGCTGATAGGCTCCAGACAGGGATGAGAGGTGCATTTGGAAAGCCACAAGGTACCTGTGCTAGAGTTGCCATTGGTCAGGTCCTTCTTTCTGTCCGTTGCAAGGATAGCAACAGCCATCATGCCCAGGAAGCTCTCCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGTAGGAAGTGGGGTTTCACCAAGTTTAACCGAACAGACTACTTGAAGTTTAAGTCAGAGAACAGGATCATGCCAGATGGTGTTAATGCAAAGCTTCTTGGATGCCATGGACCTTTGGCTAACCGTCAACCTGGAAGGGCTTTCCTGTCCTCTGCAACTGCTTAG 693 0.4517 MGRKSFGIFLDGRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSSATA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0119 230 CDD Ribosomal_L16_L10e 50 175 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele03g0119 230 Pfam Ribosomal protein L16p/L10e 21 175 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele03g0119 230 ProSitePatterns Ribosomal protein L10e signature. 117 138 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lele03g0119 230 TIGRFAM uL16_euk_arch: ribosomal protein uL16 13 183 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele03g0119 230 FunFam 60S ribosomal protein L10 10 215 - -
Lele03g0119 230 Gene3D Ribosomal protein L10e/L16 11 226 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele03g0119 230 SUPERFAMILY Ribosomal protein L16p/L10e 13 182 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele03g0119 230 PANTHER 60S RIBOSOMAL PROTEIN L10 13 222 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0119 Lele-ChrLele03 669218 671400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0119 13 229 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.636 1.33e-142 395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0119 01 699445 701384 Lele03g0119 03 669218 671400 hybridization
Lele02g0117 02 685713 687595 Lele03g0119 03 669218 671400 hybridization