Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0113 ATGGATCATACAGAAACATGTACAGTGCTGTTATCTGGGGTTTTTTATGGTCCCGATGAAGGTGTCTCTGGTCTTATTCACTTGGCAAGTTTGAAATTTATCACATTGAGGCCAGTTCTTGGGATTGGGTTTTCTGAAGACATGCTCTCCCTTAGATTGAGGGTTGAGGTACTAAAGAGTGCCTTTGATGCATGGGTTAGATACGGGGCTGGTAGCAATATGAAAGCAGAAGTTGATCCACAGACAGAGATCAGAGATGATACTCACTGCCCGCAGAGACATGTGAGGTTTGACCCTGCAGGTTTCTATGAAGCCACTAGGCCTTCAAAATCAGAACCAATGCTTCAAGAAGACATACCAGACCTACTACCTGAATTGAGACCATATCAAAGTGGAAATATTTCATTGTACCCAGAGACTCATGCACCTTGTGTGGTTGGAGGCATTCTTGCTGCATCTGAAAATGACATTCTTATTGACTCAGAGTTGCAAGTTAATGAGGATCGTAAGGTCAATTTTAAAAGACTCAAAAGAGATCGTGTGGAGTGTACATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAAGGTCTATGGGTCCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGCGTTGCTTATTCTCCTGAAGGAAAATCACTGAAATCAAAGCAGGGTTGGAATGATGTTCTTGATGTATTGAAACATGCTTTTGCTGCCAATAATGTCACCTACATTCGGATGAAAGGAGGCAGAAAATCACATGTTGCCATCAGTCAATTTAGAGGACAGCAGAAGGACAAAACAGGAACATCCCAGGAATCAACATCAAAATTTAGTCAGGTTTTATTAATTTTGATTCAACATGGAGCTAATGGCCTCAATCTTCTGGAAGCACAGCATGTGGTCCTTGTGGAGCCATTACTCAATCTTGCTGCTGAAGCACAAGCAATCAGTCGTGTGCACCGAATTGGACAGCAAAATAAGACTCCCATTCATCGTTTCATTGCGAAAGGCACGGTTGAAGGGAGCATATATAAGCTGAACAGAAGCAGGGCTGGCCATTCAGTCATCAGTGGTAACACAAAAAATCAAGACCAGCCTATGTTGACCCTGAAAGATGTTGAAACCTTGTTAGTCACATCCATTAACGAAACCAGAAAGTGGAGAAAATCCCTTTGCAAGTTTAAGGCACTTGCCGCCTTCAATGGCCGCTGCTATTGCTGCTGA 1233 0.4274 MDHTETCTVLLSGVFYGPDEGVSGLIHLASLKFITLRPVLGIGFSEDMLSLRLRVEVLKSAFDAWVRYGAGSNMKAEVDPQTEIRDDTHCPQRHVRFDPAGFYEATRPSKSEPMLQEDIPDLLPELRPYQSGNISLYPETHAPCVVGGILAASENDILIDSELQVNEDRKVNFKRLKRDRVECTCGAVSESLKYKGLWVQCDICDAWQHADCVAYSPEGKSLKSKQGWNDVLDVLKHAFAANNVTYIRMKGGRKSHVAISQFRGQQKDKTGTSQESTSKFSQVLLILIQHGANGLNLLEAQHVVLVEPLLNLAAEAQAISRVHRIGQQNKTPIHRFIAKGTVEGSIYKLNRSRAGHSVISGNTKNQDQPMLTLKDVETLLVTSINETRKWRKSLCKFKALAAFNGRCYCC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0113 410 CDD PHD_TCF19_like 185 225 - -
Lele03g0113 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 227 IPR013083 -
Lele03g0113 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 372 IPR027417 -
Lele03g0113 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 162 220 - -
Lele03g0113 410 CDD SF2_C_SNF 228 337 - -
Lele03g0113 410 Gene3D - 228 399 IPR027417 -
Lele03g0113 410 SMART helicmild6 233 326 IPR001650 -
Lele03g0113 410 SUPERFAMILY FYVE/PHD zinc finger 179 218 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0113 Lele-ChrLele03 638148 643620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0113 228 381 RAD5 or RAD16-like Gene Family AT5G22750 30.818 2.37e-15 76.6