Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0106 ATGTCTATTCATCAACTTGCTCGCCGTCTTCTGCTCGACCATGAATCAAGCCCAACCCCACCAGATGGCATATACAGGTCGAGGATGACTTATACAAGTGACGCTAATTTTGACACCAACATGGTGATAATATTAGCAGCCTTGCTCTGTGCGCTGATATGTGCTTTGGGTCTGAATTCAATAGTACGATGCGCTCTCAGATGCAGCCGAAGGTTGGCTTTTGAGACAGCAGAGGAGGCGGCAGCTCGTTTAGCTGCGAAAGGGCTGAAGAAGAGTGCGTTGCGTCAGATACCTATAGCTGTGTGCGGTTCATCACGGGCTGAAATTGCAGGCACAGATTGTCCAATTTGCTTAGGAGAGTTCGTGGACGGAGAGAAAGTGAGGGTGCTTCCAAAATGCAACCATGGATTCCATGTAAAGTGCATAGACACGTGGCTGCTTTCTCATTCCTCTTGCCCAACTTGCAGGCAGTCTCTTCACGAACCCTCCAATTCTCAGGCTGTGTCTGTACCTGCTGATCATGCTGTCTAA 531 0.4896 MSIHQLARRLLLDHESSPTPPDGIYRSRMTYTSDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLAFETAEEAAARLAAKGLKKSALRQIPIAVCGSSRAEIAGTDCPICLGEFVDGEKVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLHEPSNSQAVSVPADHAV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0106 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 162 IPR013083 -
Lele03g0106 176 CDD RING-H2_PA-TM-RING 113 156 - -
Lele03g0106 176 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lele03g0106 176 SMART FANCL_C_2 110 173 - -
Lele03g0106 176 Pfam Ring finger domain 113 156 IPR001841 -
Lele03g0106 176 SMART ring_2 114 155 IPR001841 -
Lele03g0106 176 PANTHER RING-H2 FINGER PROTEIN ATL78 7 168 IPR044602 GO:0016567|GO:0016740
Lele03g0106 176 SUPERFAMILY RING/U-box 110 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0106 Lele-ChrLele03 605874 606404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0106 9 163 C3H Transcription Factor Family AT3G10910 57.895 2.22e-58 179