Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0070 ATGGATGAATCATCTCTGCCAGCGACGATGATCTTATCGGGCTTTTTACCAACTGGGTCATTGCTAGACTCGTTGGTTCACATATCTAATGAAGTTGCCTCCATGGAAAAGTTCCCTTTCTTTCAACTCAGGAATGTCTCCTCCATGATCAGGAGGGTGAAGCTTCTTTCTTCTCTTTTCGAGGAGATTCAGGAAACAGATTCCTCACTCCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTTTGTGATCAGAAGAGTGAAGCATTTGATCCAAGACTGCCAGGAAAGCAGCTCACTCTGGAGTCTCATACAGCTAGAGTTTATTTCCAACCAATTCTATTTGCTTGTGAAGGAGATGGGAAGGGCCCTTGATATCCTTCCTCTGAGCTTGCTTAATATCACAGCAGATATAAGAGAGCAAGTGGAACTTCTGCACAAGCAAGCAAAAGCGGTTGAGTTGTTCATTGATCCTCGTGAGCTACAACGAAGAGAGCAGCTTCTGCATGTAATGGCCCATAACACTCTACAAAACAAGAACAAGGGAATTCCTGAGTTTGGGAAAGTGCAACAAATATTAAGCAGCATTAGTTTGAGAACCCCATCAGACTATGATAGAGAAATTTCAAAGCTAGAGACTGAAGCTCAGAATCAGGCAGGTACTGGAGGGTTAATCGATATGTCTAATATACATAATCTCATATCTCTGGTTACTTATTCAAAATCCATGATATTCAGAGACGGTGAAAACGAGATAGATGAAGGCTGTAAGCCAGCAGTGTCAGCATTCACATATAAGAGCTCTGATAATTCTTTTTCTTCAGCTTCTTCTCAGATGACATTGTCTGCACCTAATGTTCCTGATGAATTTCGATGCCCAATTTCACTTGATTTAATGAGAGATCCAGTGATTGTATCATCTGGGAATACATATGATCGAATTTCAATTGCACAGTGGATAAACTCGGGACATCACACTTGCCCAAAAAGTGGGCAAAGATTAATCCACACTGCTCTCATACCCAACTACGCATTGAAGAGTCTTGTACAGCAATGGTGCGATGAGAATAACGTCCCAGTGAATGAGCCGACATCATCTTCTTCCTCAAGTTCGGAGGATCCCAACGGAAAGGACAACTCAAACGAAAATACCGTCGATCGTATCTCTGCTAAAAAACCAGCCATAGATGCTGTCAAAATGACAGCAGAGTTTCTAGTAGGAAAATTGGCAACTGGGTCAGCCGAAATCCAAAGGAAGGCTGCTTATGAGCTAAGATTACTAGCAAAAACTGGGATGGATAATCGAAGAATCATCGCTGAGGCAGGGGCAATTCCATTTCTAGTGACATTACTGGGATCCCATGATCCAAGAATCCAGGAGCATGCCGTCACGGCGTTGTTTAATCTCTCCATATTCGACAATAACAAGGTTCTGATAGTGGCAGCCGGATCAGTGGATCACATAGTGCAAGTGCTTGAATCTGGGAAAACCATGGAGGCAAGAGAAAATGCAGCCGCAGCAATCTTTAGTTTGACTATGATTGATGACTGCAAGGTAGAAATCGGAGCTCGTCCGAGGGCCATACCCGCATTAGTAGGATTGTTAAGAGAAGGAACTCCTATTGCGAAAAGAGATGCTGCAACTGCCATTTTCAATCTTGCAGTTTACAATCCTAACAAGGTCAAAATCGTTAATGCCGGGGCTGTTTCTTTGCTTATCGAGTTGCTTATGGACGATAAGGCTGGGATCACAGATGATTCTTTGGCTGTCCTTGCTCTGCTTCTGGGTTGCTCTGAAGGTTTGGAGGAGATAAGGAATAGTAAAGTTTTGGTGCCTCTTTTGATTGATCTTTTGAGATTTGGGTCAGCCAAAGGGAAGGAGAATTCGATAACACTTTTGTTGGGGTTGTGCAAGGAAGAAGGCGTAGTGGTGGCAAGGAGACTATTGGCAAATCCACGAAGCATTCCTTCTCTTCAAAGCTTAGCTGCTGATGGCTCTTTAAGAGCACGAAGGAAGGCCGATGCTTTGCTTAGACTGCTCAATAGATGCTGCTCTCGGCCTCATCATTCTCTTTGA 2079 0.4348 MDESSLPATMILSGFLPTGSLLDSLVHISNEVASMEKFPFFQLRNVSSMIRRVKLLSSLFEEIQETDSSLPPSSILCFTELFFVIRRVKHLIQDCQESSSLWSLIQLEFISNQFYLLVKEMGRALDILPLSLLNITADIREQVELLHKQAKAVELFIDPRELQRREQLLHVMAHNTLQNKNKGIPEFGKVQQILSSISLRTPSDYDREISKLETEAQNQAGTGGLIDMSNIHNLISLVTYSKSMIFRDGENEIDEGCKPAVSAFTYKSSDNSFSSASSQMTLSAPNVPDEFRCPISLDLMRDPVIVSSGNTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCDENNVPVNEPTSSSSSSSEDPNGKDNSNENTVDRISAKKPAIDAVKMTAEFLVGKLATGSAEIQRKAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLGSHDPRIQEHAVTALFNLSIFDNNKVLIVAAGSVDHIVQVLESGKTMEARENAAAAIFSLTMIDDCKVEIGARPRAIPALVGLLREGTPIAKRDAATAIFNLAVYNPNKVKIVNAGAVSLLIELLMDDKAGITDDSLAVLALLLGCSEGLEEIRNSKVLVPLLIDLLRFGSAKGKENSITLLLGLCKEEGVVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSRPHHSL 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0070 692 SUPERFAMILY ARM repeat 404 681 IPR016024 -
Lele03g0070 692 MobiDBLite consensus disorder prediction 358 389 - -
Lele03g0070 692 Gene3D - 42 133 IPR036537 GO:0007166
Lele03g0070 692 SUPERFAMILY RING/U-box 275 361 - -
Lele03g0070 692 Gene3D - 377 524 IPR011989 -
Lele03g0070 692 CDD RING-Ubox_PUB 291 333 IPR045210 -
Lele03g0070 692 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Lele03g0070 692 PANTHER U BOX DOMAIN-CONTAINING 44 684 - -
Lele03g0070 692 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Lele03g0070 692 SMART arm_5 473 514 IPR000225 GO:0005515
Lele03g0070 692 SMART arm_5 516 556 IPR000225 GO:0005515
Lele03g0070 692 SMART arm_5 557 597 IPR000225 GO:0005515
Lele03g0070 692 SMART arm_5 598 639 IPR000225 GO:0005515
Lele03g0070 692 SMART arm_5 432 472 IPR000225 GO:0005515
Lele03g0070 692 MobiDBLite consensus disorder prediction 358 388 - -
Lele03g0070 692 Gene3D - 525 686 IPR011989 -
Lele03g0070 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 527 569 IPR000225 GO:0005515
Lele03g0070 692 FunFam RING-type E3 ubiquitin transferase 286 360 - -
Lele03g0070 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 443 485 IPR000225 GO:0005515
Lele03g0070 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 362 IPR013083 -
Lele03g0070 692 FunFam RING-type E3 ubiquitin transferase 498 685 - -
Lele03g0070 692 Pfam Armadillo/beta-catenin-like repeat 434 471 IPR000225 GO:0005515
Lele03g0070 692 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0070 Lele-ChrLele03 441724 443802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0070 19 683 U-box Gene Family AT3G46510 37.668 2.45e-125 385