Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0060 ATGCAGAACCTGGCAATGTGCAGTGGTTCAAAAAGTAATCTTTCTCCCTCGAACGCCATGGAAAGTGAATCCCAAAAGCGGAACTTCTGCGACTCTTCGGTTTTGCTTGAACTCTCAGCATCCGATGATCTTGAAGCTTTCAGAAAAGAAGTGGAAGACAACGGCTGCGACATCAACGTAGCAAGCTTTTGGTATGGTAGAAGAATTGGATCGAAGAAGATGGGTTGGGAGAAGAGGACGGCCCTCATGATTGCGTCTTTATTTGGAAGCACTAGAGTGTTGAAGTATATAATTGAATCTGGCATAGTTGATGTGAACAAAACCTGTGGTTCTGATAGTGCCACGGCTCTCCATTGTGCTGTTGTTGGGGGCTCTCACTCTTCACTCGAGATTGTTCAGCTCTTGCTTGATGTTGGTGCCGACGCTGATTGCGTCGATGCTAGCGGAAATAAGCCTGTCAACCTGCTTGCCCCTGCCTTCAATTCCTTCTCCAACGCAAAAAGAAAGGCCATAGAGTTGTTGCTCAGAGGTTTGCAAGGAGATCAAATTATCAATCAGCAGATGGAGCAACAAAAAGTTGCGGTGCCTACTCTGTCCTCAAAAGAAGGAACTGAGAAAAAAGAATATCCTGTTGATGTATCATTGCCTGACATAAACAGTGGTATATATGGAACGGACGAGTTTAGAATGTACAGTTTCAAGGTGAAGCCGTGTTCAAGGGCTTACTCACATGACTGGACCGAGTGTCCGTTTGTTCATCCTGGGGAGAATGCCAGGAGGAGGGACCCACGTAAGTACCCTTACAGCTGTGTGCCCTGCCCTGAGTTTCGCAAGGGCACATGCCAGAAGGGAGATGCTTGTGAGTACGCACACGGTGTTTTCGAGTCCTGGCTCCATCCTGCTCAATACAGAACAAAACTTTGCAAGGATGAGATTGGATGCACTAGGAAAGTTTGTTTCTTTGCTCACAAGCCTGAAGAGTTGCGCCCTGTGTATGCTTCTACTGGCCCTGCCGTGCCTTCGCCAAAGTCCTTGGCCAGGGTTCTTGATATGACACAAATGAGTCCATTGGCTCTTAGTTCTTCATCTTTGCCGATGCTAACTGTTTCAACTCCGCCTATGTCTCCCATTTCAGCTTCATCACCTCCTAAGAGTGGAGGCTTGTGGCAGAATAAAAGAAACCTCCCCCCACCATCATTGCAGCTCCCCGGGAGCCGACTGAAGGCTACCCTAAGTGCTAGGGATTATGGTCTGGATATGGAACTGCTTGGACTAGAAAGTCCTGCAAACCAGCATCAGCAGCAATTGATAGAAGAATTGGCTCGAATCTCATCCCCATCCCTACGGAACAAAGACTTCAGTATGATTGGTGATTTGAACCCAACAAACCTTGATGACCTTCTAGGATCTGTTGATCATTTTGTATCACCTCAATTACATGGCCTCTCAGCGTCTAGTCAATTGAACTCTCCTAGTGGGCTTCAAATGCGCCAAAATATGAACCCTCTTCGTGCAAGCCATCCAACCAACATGCCTTCCTCTCAAGTGAGGAAATCCTCTGCATTTGGGTTTGACTCTTCAGCTGTCGTGGCAGCAGCAGTGATGAATTCCAGGTCTGCTGCCTTCGCGAAGAGAAGCCAGAGTTTTATTGACCGCTGTGAATCGGCGAGCCACCATCTCGGGCTTTCTTCACCTTCTCACCCTTCCTGTAGGGCGTTCTCTGCTCTTTCAGATTGGAGTTCTCCTGATGGAAAATTGGATTGGGGCATGAATGGACATGAGATACACTTGCTGAAGAAATCTGCTTCATTCGGGTTTAGGAATAATGGGGTGTCTGCCACCTCCATGACTGCATCAGAACACGGTGAACCAGATGTCTCATGGGTTCATTCTTTAGTTAAAGATGTGCCCTCCGAGGAGTTGTGTTGTTGA 1932 0.4752 MQNLAMCSGSKSNLSPSNAMESESQKRNFCDSSVLLELSASDDLEAFRKEVEDNGCDINVASFWYGRRIGSKKMGWEKRTALMIASLFGSTRVLKYIIESGIVDVNKTCGSDSATALHCAVVGGSHSSLEIVQLLLDVGADADCVDASGNKPVNLLAPAFNSFSNAKRKAIELLLRGLQGDQIINQQMEQQKVAVPTLSSKEGTEKKEYPVDVSLPDINSGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDACEYAHGVFESWLHPAQYRTKLCKDEIGCTRKVCFFAHKPEELRPVYASTGPAVPSPKSLARVLDMTQMSPLALSSSSLPMLTVSTPPMSPISASSPPKSGGLWQNKRNLPPPSLQLPGSRLKATLSARDYGLDMELLGLESPANQHQQQLIEELARISSPSLRNKDFSMIGDLNPTNLDDLLGSVDHFVSPQLHGLSASSQLNSPSGLQMRQNMNPLRASHPTNMPSSQVRKSSAFGFDSSAVVAAAVMNSRSAAFAKRSQSFIDRCESASHHLGLSSPSHPSCRAFSALSDWSSPDGKLDWGMNGHEIHLLKKSASFGFRNNGVSATSMTASEHGEPDVSWVHSLVKDVPSEELCC 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0060 643 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Lele03g0060 643 SMART c3hfinal6 302 325 IPR000571 GO:0046872
Lele03g0060 643 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Lele03g0060 643 ProSiteProfiles Ankyrin repeat region circular profile. 112 146 - -
Lele03g0060 643 FunFam Zinc finger CCCH domain-containing protein 66 225 293 - -
Lele03g0060 643 Gene3D - 268 330 - -
Lele03g0060 643 Gene3D - 2 159 IPR036770 -
Lele03g0060 643 MobiDBLite consensus disorder prediction 373 398 - -
Lele03g0060 643 SMART ANK_2a 112 144 IPR002110 GO:0005515
Lele03g0060 643 SMART ANK_2a 77 107 IPR002110 GO:0005515
Lele03g0060 643 ProSiteProfiles Zinc finger C3H1-type profile. 267 294 IPR000571 GO:0046872
Lele03g0060 643 Pfam Ankyrin repeats (3 copies) 51 144 IPR002110 GO:0005515
Lele03g0060 643 MobiDBLite consensus disorder prediction 373 399 - -
Lele03g0060 643 SUPERFAMILY Ankyrin repeat 28 157 IPR036770 -
Lele03g0060 643 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 292 IPR000571 GO:0046872
Lele03g0060 643 PANTHER UNKEMPT FAMILY MEMBER 37 636 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0060 Lele-ChrLele03 373061 374992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0060 33 635 C2H2 Transcription Factor Family AT5G12850 40.791 3.24e-136 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele03g0060 Ank_2 8.3e-08 CL0465