Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0049 ATGGCCTCTGGCTACCGAGATCGTACGTTGGAGTTCCGATCTCTCTCTCAAACTCTGAAGAAGATCGAGGGAATCCCATTGCCCAATCAAGCTGAAGATGTTCCTTCCACATCGAAACAATATACTCCCGTGTCCTATTCTAGATCTGAATTCAACAGAAAGGCCTCTCGAATCGGGTTGGGTATCCATGAAACTTCCCAGAAGATTTCGAGGCTTGCTCAATTGGCAAAGAAGTCATCAATGTTTAATGATCCCACTGTGGAAATACAAGAATTAACGGCTTTGATTAAGAATGACATAACGGCATTGAATTCAGCTCTTTCAGATTTACAAACTATTCAAAAAATGGAAATAGCTGATGGAAATTATTCGGACGATAGAATTGTTCATTCAACAACTGTTTGTGATGACTTAAAGGGCAAACTTATGGGGGCGACTAAGCAGCTTCAAGATGTGTTAACTACTAGGACAGAGAATATCAAGGCCCATGAGAATAGGAAGCAGATATTTTCCAAGAAGGCTTCTAGGGACAATCCTTTCCAGCATCGACCAAAGCCAGTGACGGAGCCACCACCTTGGTCAAGTTCATTAAATGCATCTGAAAGTTCACAGCAAACATCAGCATCTCTTTCAAATGAAGTTACACCGAGCAATCAATTAAGACGGAGGCTAGCTGCTGACAACACTACAACCCAGCAAATGGAAATGTCTACGATGCAGCAAGTTGTCCCAAGACAGGAAAGTTATAGTCAGAGTCGTGCTACTGCTCTTCACAGTGTGGAATCTACTATCACAGAACTTAGCGGGATCTTCACTCATTTGGCCACAATGGTTGCTCATCAAGGGGAATTAGCTATCAGGATTGACGACAACATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAAGCATCTCAGCACGATATCATCGAATAGGTGGCTTCTAATCAAGATATTTGCCATTCTTATACTTTTTCTGCTGATCTTCATATTCTTCGGCTCCGCTGATCTGTAA 1029 0.4218 MASGYRDRTLEFRSLSQTLKKIEGIPLPNQAEDVPSTSKQYTPVSYSRSEFNRKASRIGLGIHETSQKISRLAQLAKKSSMFNDPTVEIQELTALIKNDITALNSALSDLQTIQKMEIADGNYSDDRIVHSTTVCDDLKGKLMGATKQLQDVLTTRTENIKAHENRKQIFSKKASRDNPFQHRPKPVTEPPPWSSSLNASESSQQTSASLSNEVTPSNQLRRRLAADNTTTQQMEMSTMQQVVPRQESYSQSRATALHSVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLKHLSTISSNRWLLIKIFAILILFLLIFIFFGSADL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0049 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Lele03g0049 342 PANTHER SYNTAXIN 49 334 IPR045242 -
Lele03g0049 342 MobiDBLite consensus disorder prediction 159 221 - -
Lele03g0049 342 SMART tSNARE_6 242 309 IPR000727 -
Lele03g0049 342 MobiDBLite consensus disorder prediction 192 221 - -
Lele03g0049 342 MobiDBLite consensus disorder prediction 159 183 - -
Lele03g0049 342 SUPERFAMILY t-snare proteins 47 302 IPR010989 GO:0016020|GO:0016192
Lele03g0049 342 Pfam SNARE domain 284 335 IPR000727 -
Lele03g0049 342 Gene3D - 46 302 - -
Lele03g0049 342 CDD SNARE_syntaxin5 250 322 - -
Lele03g0049 342 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0049 Lele-ChrLele03 294154 296802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0049 1 337 SNARE and Associated Proteins AT5G05760 68.047 1.40e-153 433