LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele02g2017	ATGCAAATACAAGGTTCAAGCCAAGCTCAGCCATTTGCTTCATCACCATTAGTGAAAAGGGCTAGTGCTCCCGTTCAAGCAGATATGGATGGATCTAACCCTAGAGTTGCAGATAATAATGTGCTTCAAGCGTCACAGGTGGAAGTTAGAGGCAGTGATGTCGCAGTTCCTATGGAAAGATCATATGATGATGATGATGATGGATATAATTGGCGGAAGTATAGACAGAAGCAAGTTAAAGGGAGTGAATTTCCATGCTCCTTCTACAAATGTACACATCCCAAGTGTGGAGCCAAATAA	300	0.4233	MQIQGSSQAQPFASSPLVKRASAPVQADMDGSNPRVADNNVLQASQVEVRGSDVAVPMERSYDDDDDGYNWRKYRQKQVKGSEFPCSFYKCTHPKCGAK	99

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele02g2017	99	SMART	WRKY_cls	65	99	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g2017	99	Pfam	WRKY DNA -binding domain	66	99	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g2017	99	ProSiteProfiles	WRKY domain profile.	60	99	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g2017	99	SUPERFAMILY	WRKY DNA-binding domain	61	99	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g2017	99	MobiDBLite	consensus disorder prediction	50	69	-	-
	Lele02g2017	99	Gene3D	WRKY domain	52	99	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele02g2017	99	MobiDBLite	consensus disorder prediction	1	38	-	-
	Lele02g2017	99	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	39	99	IPR044810	GO:0003700
	Lele02g2017	99	MobiDBLite	consensus disorder prediction	1	15	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele02g2017	Lele-ChrLele02	23949806	23950167	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele02g2017	42	99	WRKY Transcription Factor Family	AT4G26640	56.897	5.16e-16	70.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele02g2017		WRKY	1.6e-12	CL0274