Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1985 ATGGCTCATAGGTTGCTGAGGGATCATGAAGCAGATGGATGGGAACGATCTGACTTTCCTATTATCTGCGAATCATGCCTCGGGGACAACCCATATGTTCGTATGACAAGAGCTGAGTATGATAAGGAGTGTAAGATTTGTACACGGCCATTTACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAAATCTGCCAAACATGTAGTAAATTGAAAAACGTTTGTCAAGTCTGCCTTCTGGATCTTGAGTATGGGTTACCAGTTCAAGTCCGAGATACGGCTCTCAGCATCAGTTCCCATGATGCTATTCCAAAGAGCGATGTTAATCGGGAGTATTTTGCTGAAGAACACGATCGCAAGACTCGTGCTGGCTTGGATTATGAATCCTCGTATGGGAAAGTACACCCCAATGATACTATTTTGAAGCTTCAGAGGACAACACCATACTATAAAAGAAACCGGGCTCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAATGTCCTTATAGGCATGAGATGCCAGTGACTGGGGAGTTGTCACAACAAAATATCAAAGATCGTTATTATGGGGTGAACGATCCTGTGGCATTAAAGTTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGAGCCACCAGAGGATGAGACCATTAGAACTCTTTATGTTGGTGGGCTTGATGCTAGGGTCAGCGAGCAGGATCTTCGTGATCACTTTTACGCCCATGGTGAAATAGAATCCATCAAGATGGTACTCCAACGGGCTTGTGCTTTCGTAACCTACACAACCAGAGAAGGTGCAGAAAAAGCAGCAGAAGAGCTCTCCAACAAGCTAGTCATCAGTGGCCTAAGGTTGAAGCTGATGTGGGGTAGACCTCAGACGTCAAAACCTGACTCTGAAAGTTCTGATCAAGCGAGGCAGCAGGCATCTGTGGCTCATAGTGGGTTGTTGCCTCGAGCCGTCATATCACAGCAGCAGAGCCAGGATCAAACCCAGGGAGGGCATTACTATAACATTCCACCTCCTCCTCAGCAAGATAGAAGCTACTATCCATCAATGGATCCTCAGAGAATGGGCGCTGTTATTCCGTCCCAAGAAGGTGGTCCTCCTGGTGGCACTACCGGGGCTGGAGAAAACAACAAACCCAATTTGGAGAAGCAGCAAATCCAGCATTTTGCCCATCCAATGATGCCTCCACCACCTGGGCAATATCATCATCATCATCAGTATTATCCCCCAAACCCGTACGGTTATATGCCACCTGTACCTGGTTATCAAGAATACCCCCCACCATACAACCATGGGATGGCTTCATCTCAGCCACTGGCTGTAAACCAGCCATATCAGCAATCCATGCAGCTGGGTTCGGCTGCTCCCTCAGGGTCCGCACCAACAGGATCAGGACCAGCTGGTGGTTCAGCCCCTGCGGAAGCCGGAACGTCAACCTAG 1476 0.479 MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDAIPKSDVNREYFAEEHDRKTRAGLDYESSYGKVHPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEPPEDETIRTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVISGLRLKLMWGRPQTSKPDSESSDQARQQASVAHSGLLPRAVISQQQSQDQTQGGHYYNIPPPPQQDRSYYPSMDPQRMGAVIPSQEGGPPGGTTGAGENNKPNLEKQQIQHFAHPMMPPPPGQYHHHHQYYPPNPYGYMPPVPGYQEYPPPYNHGMASSQPLAVNQPYQQSMQLGSAAPSGSAPTGSGPAGGSAPAEAGTST 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1985 491 MobiDBLite consensus disorder prediction 447 476 - -
Lele02g1985 491 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Lele02g1985 491 MobiDBLite consensus disorder prediction 303 320 - -
Lele02g1985 491 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Lele02g1985 491 MobiDBLite consensus disorder prediction 300 391 - -
Lele02g1985 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Lele02g1985 491 SUPERFAMILY RNA-binding domain, RBD 221 308 IPR035979 GO:0003676
Lele02g1985 491 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Lele02g1985 491 SMART rrm1_1 229 297 IPR000504 GO:0003723
Lele02g1985 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 287 IPR000504 GO:0003723
Lele02g1985 491 MobiDBLite consensus disorder prediction 328 347 - -
Lele02g1985 491 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 381 IPR039171 GO:0003723
Lele02g1985 491 CDD RRM_RBM22 227 300 - -
Lele02g1985 491 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Lele02g1985 491 Gene3D - 149 209 - -
Lele02g1985 491 Pfam Torus domain 134 194 IPR032297 -
Lele02g1985 491 MobiDBLite consensus disorder prediction 439 491 - -
Lele02g1985 491 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Lele02g1985 491 Gene3D - 212 311 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1985 Lele-ChrLele02 23508916 23513102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1985 229 290 Eukaryotic Initiation Factors Gene Family AT1G49760 34.328 4.05e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1934 25 26998386 27006860 Lele02g1985 02 23508916 23513102 CCT
Lele26g1977 26 23181435 23193874 Lele02g1985 02 23508916 23513102 CCT
Lele27g0141 27 1108685 1119169 Lele02g1985 02 23508916 23513102 CCT
Lele28g1980 28 23009462 23021646 Lele02g1985 02 23508916 23513102 CCT
Lele02g1985 02 23508916 23513102 Lele03g1621 03 10593465 10597657 hybridization
Lele02g1985 02 23508916 23513102 Lele04g1935 04 23859554 23864022 hybridization