Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1973 ATGAAGGTGAGCAGGTTGGAGAGATTCAAAACTATCAGTAAAGGTGCACGATCAAAATATTTGAGACAGGTAGAGGCACAAGTTCCTGAACGTGATCAGGTTTATGAGCCCTCTAACGAAGAACTCAGGAGCTATATTGATCCGTATGATGTTATTTGTTCAGAGTGCTATGAAGGTGGAGATGATGGCCTGATGTTACTGTGTGATCTCTGTGATTCAGCGGCCCACACATATTGTGTTGGTCTGGGGCTGGAAGTGCCCGAAGTTGATATGTTTGATGCTACGAAGAAGAAGGAAGCCCTTGATTCTGGCAATTTTGTTACATCACTCATCAGTTCATTCCACATTAAAGCATCACAACAAGTAGTGAAGATAGATTTTTCATTTAGGCTTTACATATGA 402 0.4154 MKVSRLERFKTISKGARSKYLRQVEAQVPERDQVYEPSNEELRSYIDPYDVICSECYEGGDDGLMLLCDLCDSAAHTYCVGLGLEVPEVDMFDATKKKEALDSGNFVTSLISSFHIKASQQVVKIDFSFRLYI 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1973 133 PANTHER F18C1.6 PROTEIN 8 91 - -
Lele02g1973 133 Pfam PHD-finger 52 88 IPR019787 -
Lele02g1973 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 102 IPR013083 -
Lele02g1973 133 SUPERFAMILY FYVE/PHD zinc finger 39 86 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1973 Lele-ChrLele02 23318278 23318810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1973 23 92 PHD Transcription Factor Family AT5G58610 38.571 4.08e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele02g1973 PHD 3.3e-07 CL0390