Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1931 ATGTCAAGTGGAGCAACACACTGGTGTTATGAGTGCAGGCGGACAATCATACCTGAAGGCAGAGATTTCACATGCCCTTATTGTCATGGAGGCTTTGTGATAGAACTTGATGAGGTGCAAAGAACAGGACATATGGAAGATTTTCATCAAGTACCCGACATTTTTGGTGCTATTCATGCTGTTATGGGGAGGAGAGTCCCAGAAACAAGATTTCTAGATTCAGTTGATAATATCCTGAGGCAGAGAATGGCTGGACGAGACCCAAACTTTGATGTTAGAGGGCGATCTATATCTGCCATGGGTCCTGATCAGAGTTGGGGTTTTATTAGCTCTGGTCCTTACTTGATATTTCATGGTCAGGTTCCTGGATTCACTTTGACTAATGGAATCCCGAGGGGTGGTCCTAGGCGTGTTGATGTTAGCGACTACTTTATGGGCCCTGGACTAGAAGAACTTATTGAACAGCTCACCATGAATGATCGGCATGGTCCGGCCCCAGCCTCACGTTCTTCAATTGATGCAATGCCTACCATAAGAATCACACAGGCTCATCTTCGTTCTGACTCTCAATGCCCGGTTTGTCAAGATAAATTTGAACTTGGTTCTGAGGTGAGGGTGATGCCATGTAGCCATATTTATCATTCTGACTGTATTGTCCCTTGGTTGGTTCAACATAACTCGTGTCCTGTGTGCCGTGTTGAGTTGCCACCTCATGGACAAGTTAGTCCTCATGCTAGTCGTAATTTGGGAGGAAGTAATGCAGAAAGCACCAACAACGATGGTGTTAGGGAGAGAGAGTCTAGTCAGCAGAACCAAGGAAGGAGAAATCCGTTTTCGTTTTTGTGGCCATTCCGTTCTTCTTCTAGCTCAAACAGTAATAATCAATATGCTGAGACTAGAGGAAGCAACTCTTCAAACAGTCGTGACCAAGAATAA 936 0.4487 MSSGATHWCYECRRTIIPEGRDFTCPYCHGGFVIELDEVQRTGHMEDFHQVPDIFGAIHAVMGRRVPETRFLDSVDNILRQRMAGRDPNFDVRGRSISAMGPDQSWGFISSGPYLIFHGQVPGFTLTNGIPRGGPRRVDVSDYFMGPGLEELIEQLTMNDRHGPAPASRSSIDAMPTIRITQAHLRSDSQCPVCQDKFELGSEVRVMPCSHIYHSDCIVPWLVQHNSCPVCRVELPPHGQVSPHASRNLGGSNAESTNNDGVRERESSQQNQGRRNPFSFLWPFRSSSSSNSNNQYAETRGSNSSNSRDQE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1931 311 Pfam zinc-ribbon 6 35 IPR039525 GO:0061630
Lele02g1931 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 236 - -
Lele02g1931 311 SMART ring_2 191 231 IPR001841 -
Lele02g1931 311 Pfam Ring finger domain 190 232 IPR001841 -
Lele02g1931 311 SUPERFAMILY RING/U-box 171 238 - -
Lele02g1931 311 MobiDBLite consensus disorder prediction 271 311 - -
Lele02g1931 311 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Lele02g1931 311 MobiDBLite consensus disorder prediction 241 311 - -
Lele02g1931 311 CDD RING-H2_RNF126_like 190 232 - -
Lele02g1931 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 238 IPR013083 -
Lele02g1931 311 FunFam E3 ubiquitin-protein ligase RING1-like 155 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1931 Lele-ChrLele02 22792964 22793899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1931 135 249 C3H Transcription Factor Family AT5G01980 40.171 2.66e-24 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1931 02 22792964 22793899 Lele03g1579 03 10121205 10126691 hybridization
Lele02g1931 02 22792964 22793899 Lele04g1896 04 23366096 23367055 hybridization