Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1899 ATGGGCAACTGTTGCTCTGGCAACGACACTGATGCCCCGGCCGCCGATGCCGAGGTTGCAAAGGGAGGATCCACAAATAACAACTCCCACGGAGGCAGCAACCCCGGAGGAGATGGGGGAGGAGGAGGTAGTGGCGAGGCTTCAGCGAAATCATCCCCCGCCCCTAATCATCCTCCGTCCAAACCCGCAAAAACCGGCCCGATGGGCCCCGTCCTCCAGCGTCCCATGGAGGACGTGAAAGCCACATACAACATTGGAAAAGAGCTCGGAAGAGGACAATTTGGAGTGACGCATTTGTGCACGCATAAAGCCACCGGACAACAATACGCGTGCAAGACGATCGCGAAGAGGAAGCTCTCGAATAAAGAAGATATCGAAGACGTGAGGAGGGAGGTTCAGATCATGCACCATTTGGCGGGACAAGCGAACGTGGTTGAGCTGAAAGGAGCTTTTGAGGATAAACATTCGGTGCATCTGGTTATGGAGCTGTGCGCCGGCGGCGAACTATTCGATCGGATTATCGAGAAGGGTCATTACACGGAACGAGGGGCGGCGTCGTTGATGAGGACGATAGTGCAGATCGTCCATACTTGTCATTCCATGGGCGTCATTCACAGAGATCTCAAACCTGAGAATTTCTTGCTCTTGAATAAGAAGGAGGATTCGCCTCTCAAAGCAACCGATTTCGGATTATCCGTTTTCTACAAAGAAGGGGAGACATTTAAAGATATAGTTGGGAGTGCATATTATATAGCTCCAGAGGTATTGAAAAGGAAATATGGGCCAGAAGTTGATATTTGGAGTATTGGTGTTATGCTCTACATTCTTCTTTGTGGTGTTCCTCCTTTTTGGGCAGAATCTGAGCATGGAATCTTCAATGCCATATTAAGAGGCCACATAGATTTCTCAGCCGATCCATGGCCATCCATATCACCTTCAGCAAAAGATCTTGTCAAGAAAATGTTGAGTTCTGATCCCAAGGCTAGGCTCACAGCCCACCAAGTTCTAAATCATCCATGGATTAAGGAGGATGGAGAAGCACCTGATACTCCTCTTGACAATGCTGTGCTCAATAGGCTCAAGCAGTTCAGAGCAATGAACCAATTCAAGAAAGCTGCTTTAAGGGTGATTGCTGGGTGCTTGTCAGAGGAAGAAATAATGGGACTGAAGGAAATGTTCAAGAACATGGACACTGATGGCAGTGGAACCATTACAGTAGAAGAGCTCAAGCAAGGCCTTGCTAAACAAGGAACCAAGCTTTCTGAACAAGAAGTTAAACAATTAATGGAAGCTGCTGACGCAGATGGCAATGGAACCATAGATTATGATGAGTTCATCACAGCAACAATGCAGATGAACAGAATGAACAAAGAAGAACATCTCTACACTGCCTTCCAATATTTTGATAAAGATAACAGCGGGTACATTACCATTGAAGAAATGGAAGAAGCTCTCAAGGACTTTAACATGCTTGACGGCAGGGACATTAAAGAAATCATCTCAGAAGTTGACTCAGATAATGATGGAAGGATAAACTATGAAGAGTTTGTAGCAATGATGGGAAAAGGAAACCCAGAAGCTAAGACAAAGAAGAGGCGTGATTCATATGTTTGA 1614 0.4634 MGNCCSGNDTDAPAADAEVAKGGSTNNNSHGGSNPGGDGGGGGSGEASAKSSPAPNHPPSKPAKTGPMGPVLQRPMEDVKATYNIGKELGRGQFGVTHLCTHKATGQQYACKTIAKRKLSNKEDIEDVRREVQIMHHLAGQANVVELKGAFEDKHSVHLVMELCAGGELFDRIIEKGHYTERGAASLMRTIVQIVHTCHSMGVIHRDLKPENFLLLNKKEDSPLKATDFGLSVFYKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLCGVPPFWAESEHGIFNAILRGHIDFSADPWPSISPSAKDLVKKMLSSDPKARLTAHQVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKAALRVIAGCLSEEEIMGLKEMFKNMDTDGSGTITVEELKQGLAKQGTKLSEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNKEEHLYTAFQYFDKDNSGYITIEEMEEALKDFNMLDGRDIKEIISEVDSDNDGRINYEEFVAMMGKGNPEAKTKKRRDSYV 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1899 537 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Lele02g1899 537 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Lele02g1899 537 ProSiteProfiles EF-hand calcium-binding domain profile. 495 526 IPR002048 GO:0005509
Lele02g1899 537 FunFam calcium-dependent protein kinase 1 169 348 - -
Lele02g1899 537 FunFam Calcium-dependent protein kinase 1 349 524 - -
Lele02g1899 537 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Lele02g1899 537 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Lele02g1899 537 Gene3D Phosphorylase Kinase; domain 1 85 168 - -
Lele02g1899 537 SMART serkin_6 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele02g1899 537 ProSitePatterns Protein kinases ATP-binding region signature. 89 116 IPR017441 GO:0005524
Lele02g1899 537 Pfam EF-hand domain pair 389 449 IPR002048 GO:0005509
Lele02g1899 537 Pfam EF-hand domain pair 458 520 IPR002048 GO:0005509
Lele02g1899 537 Gene3D Transferase(Phosphotransferase) domain 1 169 348 - -
Lele02g1899 537 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Lele02g1899 537 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Lele02g1899 537 SMART efh_1 424 452 IPR002048 GO:0005509
Lele02g1899 537 SMART efh_1 388 416 IPR002048 GO:0005509
Lele02g1899 537 SMART efh_1 460 488 IPR002048 GO:0005509
Lele02g1899 537 SMART efh_1 495 523 IPR002048 GO:0005509
Lele02g1899 537 FunFam Calcium-dependent protein kinase 1 85 168 - -
Lele02g1899 537 SUPERFAMILY EF-hand 381 520 IPR011992 -
Lele02g1899 537 Pfam Protein kinase domain 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele02g1899 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 77 516 - -
Lele02g1899 537 MobiDBLite consensus disorder prediction 1 72 - -
Lele02g1899 537 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Lele02g1899 537 ProSiteProfiles Protein kinase domain profile. 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele02g1899 537 SUPERFAMILY Protein kinase-like (PK-like) 68 368 IPR011009 -
Lele02g1899 537 CDD STKc_CAMK 83 340 - -
Lele02g1899 537 Gene3D - 349 524 - -
Lele02g1899 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1899 Lele-ChrLele02 22427145 22431051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1899 1 534 EF-hand Containing Proteins AT5G12180 79.330 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele02g1899 Pkinase 1.3e-76 CL0016