Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele02g1882 | ATGTTGTCCTCTGCTTTCTCTGTCCCAGTGTGTCTTGTCCATTGTGCTTTGCTTTCTCCATTGCTGATTGTCTGCTCCGGTGAGGTTTACTTTCTCCATCGCCGTGTGTCTCCTCCATTGTGCTCTGCTTTCTTTGTCGCCATTTCTATCCTCCGTTTTGCTCCTTGCCTCTGTCTCAGGCTGCCGTTGCTAGTTCTGGACAGAATGATAATGTCTGACAGTGACCTCAGCTCACAGACATCACTGGAATTTTTATCAAGTTTTCTCTCCTCCTCATTTCTCGATCGGCCGTACTTCATCAGCTGCCACGTTGTTTTCTTGGTGCTAAACAGTGTCGAGGTTCACTTTGGACCACTCTTTGGTTCCTACTGTGCTTGGAACCATCAAGTTCTGAAACATTGGTTTGGTACGCTTTTTGCAGAAGGAAACTGTAATCGAACAAATTGGAAACTCAACGGACTGGTGTTGATACTGGACTCGACTTCCGAATGCACGTATCTCGGAGGACTTATTGCTCATAGGTTGAATCTTTCAGAATCTTCACAATGTTGTTCTCTTCTACCCCAGATGTTGTTTGTGAAAGCTTTCTTTTCCCTATATCATCTTTGCTGTAAAATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTAATATCACGTTGCCATCACCGGAAGTGGAGAACTGAGTCGAGAAGTGATGGTTTTCCATCTGGGGCTAATAGTCCCAGAACACACACTAGAAGAAGTTCCCCATTAAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGTATCGGACGGTGAGGATCACCTTCACCTTCATAGTCCCTTTGAGAGCCCCCCTAAGAATGGTTTGGACAAAGCTTTATCTGATGTGATATTGTATTCTGTTCCTCCAAGGGGTTTCTTCCATCCAAATTCTACTAGTGGTTCAGTTCTCTCAGTGTCATCAGGAGGATCAGCCATGGATGCTTTTAGAGTAAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAGGGTTCTGGTCATGATGATGGTGACGCCTTAGGGGATGTTTTCATTTGGGGCGAAGGCACTGGTGATGGTGTTTTGGGTGGTGGGACTCACCATTTTGGTGGAAAAATGGATTCTCTACTGCCCAAGGCCTTGGAATCTGCAGTAGTACTTGATGTACAGAACATAGCTTGTGGTGGACAACATGCTGCCTTGGTGACCAAGCAAGGAGAAATTTTCTCTTGGGGGGAGGAATTGGGAGGCAGGCTCGGCCATGGTGTTGACTCTCATGTTCTTCATCCAAAGCTTATAGAATCTCTGAGTAATACCAATATTGAACTTGTAGCTTGTGGGGAGTACCATACATGTGCTGTGACTCTTTCTGGTGATCTTTATACATGGGGTGATGGCACCTACAATTATGATCTTCTGGGGCATGGAAATCAGGTGAGCCAATGGGTCCCCAAAAAAGTAAATGGACCCTTGGAGGGCATACATGTTTCATCTATTGCTTGTGGTCCATGGCACACTGCAGTTGTTACCTCTGCCGGGCAATTATTTACTTTTGGTGATGGTACATTTGGCGTTCTGGGTCATGGGGACAGAAAAAGTGTTAGAATTCCAAGAGAAGTAGAGTCCCTTAAGGGTCTTCGTACTGTGCGAACTGCTTGTGGTGTTTGGCATTCTGCCGCAGTTGTAGAAGTCATGGTCGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGTGACAAAGGTCGACTTGGACATGGTGACAAGGAAGCAAAACTTGTTCCTACCTGTGTGGCAGCTCTTGTTGAGCCTAATTTTTGTCAAGTTGTGTGTGGACACAGTCTTACTGTTGCACTTACTACCTCAGGCCATGTCTATACCATGGGTAGTCCTGTCTATGGTCAACTAGGAAATCTTCATACTGACGGAAAATTACCAAAACGTGTTGAAGGAAAGCTCTCAAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGCTGCAGTCTTAACTTCAAGGACTGAAGTTTACACATGGGGCAAGGGCGCAAATGGTCGTTTAGGCCATGGGGATATAGAGGATAGAAATACTCCAACATTAGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGCATCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTCTGCCTTTTAATTTCAAAAGAAAACGTCATAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCTTGCAGCAGCAAGAAGTCTCTCAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGGGTCTGTGATAACTGTTATAATAAACTAAGGAAAAGTATTGAAACTGATTCTTCATCTCATTCTTCTGTGAGCAGAAGAGGAAGTATCAATCAAGGGCCGCTTGAGTTTAATGATAATGATGATAAATTTTATTCAAGATCTCGCAATCAGCTTGGTAGGTTTTCTTCAATGCAATCTTTGAAGCAAGTGGAAAGCAGGTCTTTAAAGAAAAACAAGAAATTGGAATTCAATAGTAGTCGTGTCTCGCCCATTCCAAATGGAGGTTACCAGTGGGTGGCATCGAATATTTCTAAATCTGCCAATCCTGTTTTTGGATCATCAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTAGAATTGTTTCTCGCGCGACATCCCCAATATCTAGACATCATAGTCCACCTCGTTCAACGACTCCAACCCCAACTCTTGGAGGACTTACATCCCCTAAGATAGGTGTGGATGATGTTAAGAGGACAAACGATAGCCTTAACCAAGAGATTATTAAATTAAGAGCTCAGGTGGAAAATATGACTCGAAAAACTCAACTTCAAGAAGTTGAGTTGGAAAGAGCAACTAAACAGCTCAAGGAAGCAATTGCATGTGCTAGTGAAGAAACTTCCAAATGCAAAGCAGCAAAGGAAGCGATCAAGTCGCTTACTAACCAGCTGAAGGACATGGCTGAGAAGCTACCTGCAGGAGAATCTAGGAATGTGAAATTTCCTTCTGTTGCTTCCTTTGAATCAAATCCTTCTTCTAATGAACTCATCAATTCTTCTATTGATGGATTAAGTATTCAAGCTGCTAGCCCAGAACCAGACTTAACCGTACTGAACAACCAGTCACTTTCAAACGGATTAAATACCAACGGTAATCGAAGTGCAGGTCACAACAGCAAACAGAGCCAGTCAGATGCAACGATTAGAAATGGGAGCAGAACAAAGGAAGGTGAGACTCGTGGCGAGGTCGGATGGGTTGAGCAAGATGAGCCTGGAGTATATATTACATTTACTTCCCTTGGGGGCGTCATAGATCTTAAGAGAGTTCGTTTCAGTCGAAGGCGGTTTAGTGAGAAGCAAGCCGAACAATGGTGGGCAGAGAATCGGGCAAGAGTATACGAGAAGTACAATGTACGCGTGACTGACAAGTCAGCCATTGATGAAACAATCTGTAAATGA | 3570 | 0.4361 | MLSSAFSVPVCLVHCALLSPLLIVCSGEVYFLHRRVSPPLCSAFFVAISILRFAPCLCLRLPLLVLDRMIMSDSDLSSQTSLEFLSSFLSSSFLDRPYFISCHVVFLVLNSVEVHFGPLFGSYCAWNHQVLKHWFGTLFAEGNCNRTNWKLNGLVLILDSTSECTYLGGLIAHRLNLSESSQCCSLLPQMLFVKAFFSLYHLCCKICKDKDEAEVWFSGLKALISRCHHRKWRTESRSDGFPSGANSPRTHTRRSSPLNSPFGSNESLQKVSDGEDHLHLHSPFESPPKNGLDKALSDVILYSVPPRGFFHPNSTSGSVLSVSSGGSAMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHHFGGKMDSLLPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEELGGRLGHGVDSHVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYDLLGHGNQVSQWVPKKVNGPLEGIHVSSIACGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVRIPREVESLKGLRTVRTACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVVCGHSLTVALTTSGHVYTMGSPVYGQLGNLHTDGKLPKRVEGKLSKSFVEEIACGAYHAAVLTSRTEVYTWGKGANGRLGHGDIEDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWASGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCYNKLRKSIETDSSSHSSVSRRGSINQGPLEFNDNDDKFYSRSRNQLGRFSSMQSLKQVESRSLKKNKKLEFNSSRVSPIPNGGYQWVASNISKSANPVFGSSKKFFSASVPGSRIVSRATSPISRHHSPPRSTTPTPTLGGLTSPKIGVDDVKRTNDSLNQEIIKLRAQVENMTRKTQLQEVELERATKQLKEAIACASEETSKCKAAKEAIKSLTNQLKDMAEKLPAGESRNVKFPSVASFESNPSSNELINSSIDGLSIQAASPEPDLTVLNNQSLSNGLNTNGNRSAGHNSKQSQSDATIRNGSRTKEGETRGEVGWVEQDEPGVYITFTSLGGVIDLKRVRFSRRRFSEKQAEQWWAENRARVYEKYNVRVTDKSAIDETICK | 1189 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele02g1882 | 1189 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 356 | 413 | IPR000408 | - | |
| Lele02g1882 | 1189 | MobiDBLite | consensus disorder prediction | 920 | 943 | - | - | |
| Lele02g1882 | 1189 | Pfam | FYVE zinc finger | 741 | 807 | IPR000306 | GO:0046872 | |
| Lele02g1882 | 1189 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1121 | 1173 | IPR013591 | - | |
| Lele02g1882 | 1189 | PRINTS | Chromosome condensation regulator RCC1 signature | 416 | 432 | IPR000408 | - | |
| Lele02g1882 | 1189 | PRINTS | Chromosome condensation regulator RCC1 signature | 523 | 537 | IPR000408 | - | |
| Lele02g1882 | 1189 | PRINTS | Chromosome condensation regulator RCC1 signature | 507 | 523 | IPR000408 | - | |
| Lele02g1882 | 1189 | PRINTS | Chromosome condensation regulator RCC1 signature | 466 | 482 | IPR000408 | - | |
| Lele02g1882 | 1189 | PRINTS | Chromosome condensation regulator RCC1 signature | 626 | 644 | IPR000408 | - | |
| Lele02g1882 | 1189 | PRINTS | Chromosome condensation regulator RCC1 signature | 397 | 410 | IPR000408 | - | |
| Lele02g1882 | 1189 | PRINTS | Chromosome condensation regulator RCC1 signature | 684 | 705 | IPR000408 | - | |
| Lele02g1882 | 1189 | Pfam | Transcription factor BRX N-terminal domain | 1002 | 1032 | IPR027988 | - | |
| Lele02g1882 | 1189 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 637 | 688 | IPR000408 | - | |
| Lele02g1882 | 1189 | MobiDBLite | consensus disorder prediction | 239 | 267 | - | - | |
| Lele02g1882 | 1189 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 327 | 574 | - | - | |
| Lele02g1882 | 1189 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 575 | 746 | - | - | |
| Lele02g1882 | 1189 | ProSiteProfiles | BRX domain profile. | 1120 | 1174 | IPR013591 | - | |
| Lele02g1882 | 1189 | MobiDBLite | consensus disorder prediction | 813 | 832 | - | - | |
| Lele02g1882 | 1189 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 414 | 465 | IPR000408 | - | |
| Lele02g1882 | 1189 | MobiDBLite | consensus disorder prediction | 813 | 837 | - | - | |
| Lele02g1882 | 1189 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 584 | 633 | IPR000408 | - | |
| Lele02g1882 | 1189 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 465 | 517 | IPR000408 | - | |
| Lele02g1882 | 1189 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 414 | 462 | IPR000408 | - | |
| Lele02g1882 | 1189 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 521 | 569 | IPR000408 | - | |
| Lele02g1882 | 1189 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 636 | 685 | IPR000408 | - | |
| Lele02g1882 | 1189 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 690 | 737 | IPR000408 | - | |
| Lele02g1882 | 1189 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 400 | 410 | IPR000408 | - | |
| Lele02g1882 | 1189 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 507 | 517 | IPR000408 | - | |
| Lele02g1882 | 1189 | SMART | fyve_4 | 739 | 808 | IPR000306 | GO:0046872 | |
| Lele02g1882 | 1189 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 689 | 740 | IPR000408 | - | |
| Lele02g1882 | 1189 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 521 | 572 | IPR000408 | - | |
| Lele02g1882 | 1189 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 747 | 815 | - | - | |
| Lele02g1882 | 1189 | Gene3D | - | 313 | 476 | IPR009091 | - | |
| Lele02g1882 | 1189 | Gene3D | - | 477 | 651 | IPR009091 | - | |
| Lele02g1882 | 1189 | Gene3D | - | 652 | 752 | IPR009091 | - | |
| Lele02g1882 | 1189 | SUPERFAMILY | FYVE/PHD zinc finger | 742 | 811 | IPR011011 | - | |
| Lele02g1882 | 1189 | MobiDBLite | consensus disorder prediction | 1073 | 1120 | - | - | |
| Lele02g1882 | 1189 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 466 | 520 | IPR000408 | - | |
| Lele02g1882 | 1189 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 585 | 636 | IPR000408 | - | |
| Lele02g1882 | 1189 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 745 | 807 | IPR017455 | - | |
| Lele02g1882 | 1189 | MobiDBLite | consensus disorder prediction | 920 | 954 | - | - | |
| Lele02g1882 | 1189 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 184 | 1022 | - | - | |
| Lele02g1882 | 1189 | MobiDBLite | consensus disorder prediction | 1073 | 1107 | - | - | |
| Lele02g1882 | 1189 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 675 | 685 | IPR000408 | - | |
| Lele02g1882 | 1189 | SUPERFAMILY | RCC1/BLIP-II | 355 | 742 | IPR009091 | - | |
| Lele02g1882 | 1189 | MobiDBLite | consensus disorder prediction | 235 | 267 | - | - | |
| Lele02g1882 | 1189 | Pfam | Unstructured region between BRX_N and BRX domain | 1043 | 1113 | - | - | |
| Lele02g1882 | 1189 | Coils | Coil | 951 | 1027 | - | - | |
| Lele02g1882 | 1189 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 753 | 814 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele02g1882 | Lele-ChrLele02 | 22234784 | 22243852 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele02g1882 | 1011 | 1183 | Major Intrinsic Protein MIP | AT1G31880 | 34.409 | 4.27e-13 | 70.5 |