Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1776 ATGGAGGTTCCAAGTAATAACCAGCAAGCAGCTGAAGGAGGAGGAGGAGGAGGAGGGTCGTCTTCATCTCTGAAGAAGAATGGAAGAGGGAAAATAGAGATAAAGAGGATAGAGAACACAACGAATAGGCAAGTGACTTTCTGTAAGAGACGTAATGGTTTACTCAAGAAGGCTTATGAATTGTCTGTTCTTTGCGATGCTGAAGTCGCCCTCGTCGTCTTCTCTACCCGTGGCCGCTTGTACGAGTATGCCAATAACAGTGTTAGGGCAACAATTGAAAGGTACAAGAAAGCATGCGCTGCTTCCTCAAACACAGAATCTGTAGCTGAAGCTAACACCCAGTTCTATCAGCAAGAATCATCCAAGTTAAGAAGGCAGATACACGACATTCAGAATCTAAACAGGCACATTCTGGGTGAAGCTCTGAGCACATTGAGTCTGAAGGAGCTTAAAAACCTAGAGGGAAGACTAGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTCGCTGAAGTTGAGTTCATGCAAAAGCGGGAAATGGAGCTTCAAAACCATAACAATTATCTAAGAGCAAAGATAGCAGAACAGGAGAGGGCACAACAGCAGCAGCAGCAATCAAGTGTGATGCAGCAGCAGGGAAGTGTGTGTGAGTCAATGCCCTCACAATCTTATGACCGCAACTTCTTCCCTGTAAATCTCTTGGCTTCTAATAATCATCACTATTCTTCTCATAGTCAAGATCACACAGCTCTCCAGCTTGTGTAA 777 0.4389 MEVPSNNQQAAEGGGGGGGSSSSLKKNGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASSNTESVAEANTQFYQQESSKLRRQIHDIQNLNRHILGEALSTLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREMELQNHNNYLRAKIAEQERAQQQQQQSSVMQQQGSVCESMPSQSYDRNFFPVNLLASNNHHYSSHSQDHTALQLV 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1776 258 ProSitePatterns MADS-box domain signature. 29 83 IPR002100 GO:0003677|GO:0046983
Lele02g1776 258 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Lele02g1776 258 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Lele02g1776 258 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Lele02g1776 258 CDD MADS_MEF2_like 28 104 IPR033896 GO:0000977|GO:0045944
Lele02g1776 258 MobiDBLite consensus disorder prediction 1 27 - -
Lele02g1776 258 FunFam agamous-like MADS-box protein AGL11 39 122 - -
Lele02g1776 258 Pfam K-box region 111 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele02g1776 258 Gene3D - 39 108 IPR036879 GO:0003677|GO:0046983
Lele02g1776 258 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
Lele02g1776 258 ProSiteProfiles K-box domain profile. 113 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele02g1776 258 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 210 - -
Lele02g1776 258 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
Lele02g1776 258 MobiDBLite consensus disorder prediction 1 31 - -
Lele02g1776 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
Lele02g1776 258 SUPERFAMILY SRF-like 28 103 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1776 Lele-ChrLele02 21161756 21166875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1776 15 258 MADS-box Gene Family AT3G58780 69.758 4.37e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele02g1776 K-box 2.8e-25 No_clan