Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1715 ATGAGATGTAAGGAGATTGCTTCTGTGTGTGTTGGAATGTCCATGACAGTTCTGGAACGACTTGTTTTTGCGGCATTCGCCTGCATTCTCGCTCTAGGAGGGTCAATAATGGGAACGATAGTGGGAGGGATGAAGGGACATAGATCAGAAGCAGGAATGCTTGATGGAGCTGGCAAAGGAGCAGTTTCAGGAGCCATTGCTGCTATTGAATTACTTGATCATTTCGTTGCTCATCATCATCATCATGAGCCTATGTCCAAGCTTGCCCTATTAAGCAGTTTATTCAATGGGAAGGTCCTAATGGAATGGGTATATCCAGCTTATCAATGGCATATTGGGATACCTGAAACAATCTACAGAGAAGTATCAGATATTTATGATATGAGAGGAGTGCCAGGCTTGTCCCAAAAATTGATTCAAAGCCTCCCTTTGCATCAATTCAACTCCACCCAAATGTTGGCTTCATACAATGAATCCTGCTGCTCAATTTGCTTCCTGGAGTTTGAAGATGGGGAAGTGATAAGGAAGCTTCCAAAATGTGACCATATCTATCACTTTCAATGTATAGATAAATGGCTTATCCAACAAGGATCTTGCCCCATGTGTAGAACTTATGTTCTTGACGATGATTTTGTTGTTTAG 642 0.419 MRCKEIASVCVGMSMTVLERLVFAAFACILALGGSIMGTIVGGMKGHRSEAGMLDGAGKGAVSGAIAAIELLDHFVAHHHHHEPMSKLALLSSLFNGKVLMEWVYPAYQWHIGIPETIYREVSDIYDMRGVPGLSQKLIQSLPLHQFNSTQMLASYNESCCSICFLEFEDGEVIRKLPKCDHIYHFQCIDKWLIQQGSCPMCRTYVLDDDFVV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1715 213 Pfam Ring finger domain 161 203 IPR001841 -
Lele02g1715 213 SMART ring_2 161 202 IPR001841 -
Lele02g1715 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 207 IPR013083 -
Lele02g1715 213 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 8 204 IPR044523 -
Lele02g1715 213 CDD RING-H2_PA-TM-RING 160 203 - -
Lele02g1715 213 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Lele02g1715 213 SUPERFAMILY RING/U-box 140 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1715 Lele-ChrLele02 20687717 20689909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1715 17 206 C3H Transcription Factor Family AT5G66070 31.156 8.09e-33 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1715 02 20687717 20689909 Lele02g1715 02 20687717 20689909 ECH
Lele02g1715 02 20687717 20689909 Lele03g1429 03 8680265 8683472 hybridization
Lele02g1715 02 20687717 20689909 Lele04g1698 04 21604021 21606266 hybridization