LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele02g1683	ATGAGAAGGGTTAGAGGAGCCGCCGCTGTCAAACAGGCGGCCGTTGAACTCAATGGATCCGGTTCGAGGGCGGTTTTAAAAGAGCCAAGGTACCGGGGCGTGAGGAAGAGGCCGTGGGGTAGATTCGCCGCCGAGATCAGAGACCCCTTGAAGAAAGCTCGTGTCTGGCTAGGCACCTTCAACTCCGCCGAGGAAGCGGCTCGAGCCTACGACGCCGCGGCGGTAGCCCTCCGTGGACCTAAGGCCAAGACCAATTTCCCCATCTCTTCTTCATTCTCGCCGTTCGGTTACCCCACCACCAACCCCAACGTCAACGATGATGTCTTGGATCACCGGTTGTACGTGAATAACGCTTTCCAGGAGCATCAGATTAACCCTCAGAGACCAGCCACCAGTAGCATGAGCAGCACGTCTTTCAGCGGGCCACGGCCTCCGTCCACGACGGCTCCGGCAGCAGTAAACCGGAGATACCCCCGGAAGCCACCGGTCATGCCGGAGGATTGCCATAGCGACTGCGATTCCTCGTCTTCAGTGATCGACGGCGACGGCGACGGCGACGTTGAGGTCGCCGATTTTGTCTCGTTGTCGTTCCGTCAACCGTTGCCCTTTGATCTCAACTTCCCACCGATTGATGTCGCGAACGTGGCTTGTGACGATCTTCACTGTACCGCTCTCTGCCTCTGA	684	0.5848	MRRVRGAAAVKQAAVELNGSGSRAVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFNSAEEAARAYDAAAVALRGPKAKTNFPISSSFSPFGYPTTNPNVNDDVLDHRLYVNNAFQEHQINPQRPATSSMSSTSFSGPRPPSTTAPAAVNRRYPRKPPVMPEDCHSDCDSSSSVIDGDGDGDVEVADFVSLSFRQPLPFDLNFPPIDVANVACDDLHCTALCL	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele02g1683	227	MobiDBLite	consensus disorder prediction	121	157	-	-
	Lele02g1683	227	CDD	AP2	29	89	IPR001471	GO:0003700\|GO:0006355
	Lele02g1683	227	MobiDBLite	consensus disorder prediction	121	147	-	-
	Lele02g1683	227	FunFam	Ethylene-responsive transcription factor 2	30	88	-	-
	Lele02g1683	227	SMART	rav1_2	30	93	IPR001471	GO:0003700\|GO:0006355
	Lele02g1683	227	Pfam	AP2 domain	29	79	IPR001471	GO:0003700\|GO:0006355
	Lele02g1683	227	PRINTS	Ethylene responsive element binding protein signature	31	42	IPR001471	GO:0003700\|GO:0006355
	Lele02g1683	227	PRINTS	Ethylene responsive element binding protein signature	53	69	IPR001471	GO:0003700\|GO:0006355
	Lele02g1683	227	ProSiteProfiles	AP2/ERF domain profile.	30	87	IPR001471	GO:0003700\|GO:0006355
	Lele02g1683	227	SUPERFAMILY	DNA-binding domain	30	89	IPR016177	GO:0003677
	Lele02g1683	227	Gene3D	AP2/ERF domain	30	89	IPR036955	GO:0003700\|GO:0006355
	Lele02g1683	227	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	22	180	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele02g1683	Lele-ChrLele02	20488095	20488778	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele02g1683	1	227	AP2-EREBP Transcription Factor Family	AT1G50640	53.617	9.36e-53	168

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele02g1683		AP2	1.9e-14	CL0081