Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1682 ATGGCTAGCGAAGAGGAGAGACATCTGGAGACTCAACTAGAGCTTCAATTGCAGGAACAGAGGGATTCACTCTCTGCTCTCGATGAAGCTTTGGTCTCTGATCCATCCAATCCCGAGCTTCTCCTGGTTCATGAGGAGCTTGTTCATGCAATGAAGGATGCAGAGGAAGGGCTTCTTCACTTAAAGCGTACTCGATTATTGCATGAAGCAGATTCAGTGCTGAATAGATCCAATCTCTCTGCTCAAACAGAGAAAGTTGATCCACTTGACCCCGCAGATGTTGCACCAGAACCTCTAGAGAAACCGCGTTATTCTATTGGATCTAAATGTAGATTTCGTCACACTGATGGGCGGTGGTACAATGGTCAAGTAGTGCAGTTAAATAGTTCTTCAGCAAAAATTTCATTCCTTATGCCCACATCTGAGAATATGCGGATGTGCAAGTTTTTTCTGCAACAACGATGTCGATTTGGTACTAACTGTCGTCTATCACATGGTATTGATGTTCCACTGTCTTCTCTCAGAAAATTTGTTCCTACCATCTGGAAGCAGTCCCTGGTTGGTTCAAGTATATGGGCAGTCTCAGATGTTAATGCTGGCATTTGGAAGGAAGCCGAGCTTGAATCCTGGGATGAAGGACTTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTGTGAAGTTAGGAGCAGAAGCTATGGCATTATCTGAATGTGCAGAAGCGATTGATGAAGAGAGTGATTCCAGCTCGGAACAGTCTGATTTTAGTGACTATGAAGAAGATGATGACCCACAAGGTATAGGCTTTCTGGAAAGCACCAACCTGCAGCGGGGTATTCAGACTGAAACTGCGATATTTGCGAAGTGGGAGAATCACACCAGGGGTGTAGCTTCCAAAATGATGGCTAATATGGGTTACCGTGAAGGTATGGGTTTAGGTGTTTCTGGTCAAGGGATGCTTAATCCCATCCCAGTGAAGGTCCTTCCTGCAAAGCAATCCTTAGATCATGCTCTTGAATCTCATAAAGATAAAGGAGAAGAGAGCAAAGATAATCGAGGTAAGAAACGAAGTAGAGGTGGTAAGAGAAAACGTGACAAGAAATTTGCCGAGGCGATTCGGGTAGCAAAAGAAGAGGAGGAATCGGTATCAGATGTATTTACACTAATAAATAATCAGCTGGCAATGCATAGTGCAGCTATGAATGGTGGACCAGTGAAGCAGCAGCAAAGTAAAGGTTCAGGAGAAGGCAAAAAGGTTGATAGGCGGGCTTTGATTGCTTATGAGGACGAGGTAAAGGACTTGAGGATTCGGGTTGAGAAGCTTGAAGAAATGGGGAATAGAAACAAGAAAGAGAAGGTAGTTTACGAGGCCGCCATGAGGAAGTTAATCGAAACCCGCAAGGCTTTAGTAGAGGCAGAAGCAGCCCATGTCTCGGCCTCAAACGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG 1494 0.4451 MASEEERHLETQLELQLQEQRDSLSALDEALVSDPSNPELLLVHEELVHAMKDAEEGLLHLKRTRLLHEADSVLNRSNLSAQTEKVDPLDPADVAPEPLEKPRYSIGSKCRFRHTDGRWYNGQVVQLNSSSAKISFLMPTSENMRMCKFFLQQRCRFGTNCRLSHGIDVPLSSLRKFVPTIWKQSLVGSSIWAVSDVNAGIWKEAELESWDEGLGVGQVVFRDDGSSVKLGAEAMALSECAEAIDEESDSSSEQSDFSDYEEDDDPQGIGFLESTNLQRGIQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVSGQGMLNPIPVKVLPAKQSLDHALESHKDKGEESKDNRGKKRSRGGKRKRDKKFAEAIRVAKEEEESVSDVFTLINNQLAMHSAAMNGGPVKQQQSKGSGEGKKVDRRALIAYEDEVKDLRIRVEKLEEMGNRNKKEKVVYEAAMRKLIETRKALVEAEAAHVSASNAVVSKEKEKRWLKF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1682 497 Pfam G-patch domain 295 337 IPR000467 GO:0003676
Lele02g1682 497 MobiDBLite consensus disorder prediction 339 356 - -
Lele02g1682 497 Pfam CCCH-type zinc finger 145 166 IPR041367 -
Lele02g1682 497 MobiDBLite consensus disorder prediction 78 98 - -
Lele02g1682 497 SMART G-patch_5 293 339 IPR000467 GO:0003676
Lele02g1682 497 Coils Coil 1 30 - -
Lele02g1682 497 ProSiteProfiles G-patch domain profile. 295 341 IPR000467 GO:0003676
Lele02g1682 497 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Lele02g1682 497 Coils Coil 457 477 - -
Lele02g1682 497 MobiDBLite consensus disorder prediction 245 272 - -
Lele02g1682 497 Gene3D - 105 178 - -
Lele02g1682 497 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Lele02g1682 497 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Lele02g1682 497 MobiDBLite consensus disorder prediction 339 369 - -
Lele02g1682 497 MobiDBLite consensus disorder prediction 245 268 - -
Lele02g1682 497 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 497 - -
Lele02g1682 497 Coils Coil 426 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1682 Lele-ChrLele02 20480188 20484223 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele02g1682 G-patch 4.9e-12 CL0449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1682 02 20480188 20484223 Lele03g1401 03 8462822 8471286 hybridization
Lele02g1682 02 20480188 20484223 Lele04g1668 04 21410392 21414411 hybridization