LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele02g1659	ATGGTTGCTGAGGGAACGGAACCGCCGGAGGAGACTCGATCGGAGGACTTGCCGGTGAAAAGGCCGATTGAGAATGGTGGGGCTGAGGAATTGACTAAGAAGCCTAAGGTTGAAGCAGCTGATGCGTCTAGCGGGGAGTTGAAGAGAGTGGCGGAGATTGTGCTGGTTTTGTCGACGATGGCGGCAATGCGAGGCGGGAAGAAGCCCACTAATGTGGAGATTGAGTTGATGAAGGAAGCGAGGATGAAGTTGGTGGAGTTGTGTCAAGGAATGGCTCCTAAGGATATTGTCGCGAGGGAAGCTGTAGGGACTGTGATTGAGGATCTGGGATTGAACGGGAAGATTAAAGATCATAGATTAGGGTTTCAAACTCCAAAGATGTCTATAACTGAAAGGTTCGCACTCTCCAAGTTGAAGATGGAAGAATCAAAGAAGTTTCCTGAACATTCCGCTCAATCTACTTCTCAGCCATTGCAAACAAGCATGGGTTCTGGAATGGTGGAAAACCGTATGCCATCTCATACTGTTCGAATGCTTCCCATCGACAAATCAAGTCACACAGGACTCTATCCTTCTGGTACCATAACTTCTACTACTGGGATTCATGTTTCTGCAGGATCATCTGCTGCTTTGCAATATCAATCAACTACTAGTGAAGTAAAACCGCCTATAGTTTCTGGTGGAATGCCTAGCAGTCACTTGGGTAGAAATTCATCTTCATTAGCATTGCCTAAAGTTGAACAACCACAGTTCAAAGTTGATGGAGGATCAAGTGGGCCTTATTTGCTGCATGCTCAAGCAAACTCTTCATCAAACCAACCCTTGGTGACTGCTCCAACATGGTCAATGCAAACTCAAACTCAATCTGCTTCATTAGCTAGAAGTACGCCAGAAAACAAAGTGACTGGACATAACCCTGTCAAGGGTGAGGGAATGGTTGACCTAACTGGGCCCAGAGCTGCTTCACAAATAGGAAGGGATCAGGGCTATAGACCCTTAGTAACTCAAACAATGCCTGGAAATTTGTCTAGCTTGCACCAGCCATTGCAGGGCATGAACATTGTTCAGCCTCCTTCACTTCATAATAATCATGCTGAAATTGCAAAGATTGTCCAGAAACTGTTACAACCAAAGCTTCCCGAGCATCGCACATGGACTCCTCCATCAAGGGATTATATGAACAAGGCATTTACTTGCCAGATGTGTGATCTCGCTGTTAATGAAGTGGATACTGTGCTTCTTTGTGACGCTTGTGAAAAAGGGTTTCACTTGAAGTGTTTGCAGCCATCACTTTTGAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGGTGCTTGACATTAAGCGGTGGAAAGCCTTTACCTCCAAAATATGGTCGTGTCATGAGGTCCACGAACACTCCACCAAAACTGCCCTCTAACACAGGTGGAGTCCAACCATCCTTAGAGAAGAAAAGTGGAGTTGCAGCTCCAAAGGTCAGCTCACAAGAGTTAACAATAAATGGAGGCTCTTTTTCCACTGATGCGGCCAGCAGCCATAAAAATGCTGAGCTTCCAGCTGTTTCTAAGATGCCTGATACAAAAGAAATGCAAGATAACACTCAGTCATCCAGCAGCAAACACATGGATGAGAAGCCTGACCCAAATATCTCAATAAAATCCCTTAGTTCAGCTTCTAGTCCTTCTGTTGTCTTGCCAGGTGAAAGTTCTTCTGAACAAATAGTTTCTGAGTCATCTACTTCTAAAGAGAGAACCTTCGCTTCAGAATCAGAAGTGTTTCCTCAATTAACTGAGTCAGTTAAATCTAACAATTTGCAATTGTCAAAAAATGTACAAGTTGAACTGACACCACTACCAAACAATGTTGAAGTTTCGTTATATAAACATGCTGACAATAGTTTGACAGATAATAACAGAAAGGAATCTCATGGGGGAGAAAATTTGATATATGATATCAAACGTGATGACCAATATGTTGCACTAGCAAATTCTGATAAAAGTTCTGGAACACATACTGAAGGTAGACAATGTACTGCATTATATTCAGATGGCTTACCTGCAGTAGAATGGGTTGGTGATATTGTACAACCTGTTGATGAAAAAAAGTTTTACCAATCTTGCCGTGTTAATGGAGTTACATATAGGCTGCAGGATCATGCTCTTTTTAAATCCAGTCATGGCAAGTTAATTCCATCTAAACTGCAGTCTATGTTTGAAGATTGCAAAACTGGGATGAAGTGGGTAAATGTGACAAAGTGCTACTTTCCAGGTGATTTACCAGGGAATATCCCTCACCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGCTCCATTCAAGGACCCTGTGAAGTCCTCCCCTCTCTTAAATTTCAACAAGAAAACAATAGACGAAGAGGGTTAGAACCTGAGGAAAGTGCTAGACTTCAGCCAATTTTCCTATGCAGGTTTGTAGCTTTTCAGACACTAGACGAGTTCAAGTCCGTCTGA	2517	0.4303	MVAEGTEPPEETRSEDLPVKRPIENGGAEELTKKPKVEAADASSGELKRVAEIVLVLSTMAAMRGGKKPTNVEIELMKEARMKLVELCQGMAPKDIVAREAVGTVIEDLGLNGKIKDHRLGFQTPKMSITERFALSKLKMEESKKFPEHSAQSTSQPLQTSMGSGMVENRMPSHTVRMLPIDKSSHTGLYPSGTITSTTGIHVSAGSSAALQYQSTTSEVKPPIVSGGMPSSHLGRNSSSLALPKVEQPQFKVDGGSSGPYLLHAQANSSSNQPLVTAPTWSMQTQTQSASLARSTPENKVTGHNPVKGEGMVDLTGPRAASQIGRDQGYRPLVTQTMPGNLSSLHQPLQGMNIVQPPSLHNNHAEIAKIVQKLLQPKLPEHRTWTPPSRDYMNKAFTCQMCDLAVNEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSTNTPPKLPSNTGGVQPSLEKKSGVAAPKVSSQELTINGGSFSTDAASSHKNAELPAVSKMPDTKEMQDNTQSSSSKHMDEKPDPNISIKSLSSASSPSVVLPGESSSEQIVSESSTSKERTFASESEVFPQLTESVKSNNLQLSKNVQVELTPLPNNVEVSLYKHADNSLTDNNRKESHGGENLIYDIKRDDQYVALANSDKSSGTHTEGRQCTALYSDGLPAVEWVGDIVQPVDEKKFYQSCRVNGVTYRLQDHALFKSSHGKLIPSKLQSMFEDCKTGMKWVNVTKCYFPGDLPGNIPHPCISEVNEVYESNSDRTEMAGSIQGPCEVLPSLKFQQENNRRRGLEPEESARLQPIFLCRFVAFQTLDEFKSV	838

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele02g1659	838	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	353	452	IPR013083	-
	Lele02g1659	838	MobiDBLite	consensus disorder prediction	281	314	-	-
	Lele02g1659	838	MobiDBLite	consensus disorder prediction	550	583	-	-
	Lele02g1659	838	MobiDBLite	consensus disorder prediction	1	42	-	-
	Lele02g1659	838	ProSiteProfiles	Zinc finger PHD-type profile.	396	448	IPR019787	-
	Lele02g1659	838	Pfam	PHD-finger	399	446	IPR019787	-
	Lele02g1659	838	MobiDBLite	consensus disorder prediction	149	164	-	-
	Lele02g1659	838	PANTHER	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	12	829	-	-
	Lele02g1659	838	MobiDBLite	consensus disorder prediction	8	42	-	-
	Lele02g1659	838	ProSiteProfiles	BAH domain profile.	712	838	IPR001025	GO:0003682
	Lele02g1659	838	SUPERFAMILY	FYVE/PHD zinc finger	390	453	IPR011011	-
	Lele02g1659	838	SMART	PHD_3	398	446	IPR001965	-
	Lele02g1659	838	MobiDBLite	consensus disorder prediction	466	481	-	-
	Lele02g1659	838	MobiDBLite	consensus disorder prediction	456	583	-	-
	Lele02g1659	838	MobiDBLite	consensus disorder prediction	492	513	-	-
	Lele02g1659	838	MobiDBLite	consensus disorder prediction	144	164	-	-
	Lele02g1659	838	Gene3D	-	692	837	IPR043151	-
	Lele02g1659	838	MobiDBLite	consensus disorder prediction	281	302	-	-
	Lele02g1659	838	ProSitePatterns	Zinc finger PHD-type signature.	399	445	IPR019786	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele02g1659	Lele-ChrLele02	20338316	20343351	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele02g1659	409	490	C2H2 Transcription Factor Family	AT3G01460	29.885	6.42e-06	48.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Lele02g1659		PHD	9.5e-09	CL0390