Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1636 ATGAGAATTTTGACCCAAAGTAAAGAGATGGAATCAGATCTTGGCAAGCTTTTCATTGGAGGAATTTCTTGGGACACTGATGAAGAACGACTTAAGGAATATTTTGGGAAATATGGAGAGGTGATAGAGACCGTGATCATGAGAGATCGCGCGACAGGTCGTGCTCGTGGTTTTGGTTTTGTAGTGTTTGCTGATCCTGCTGTTGCTGAAAGAGTCACTATGGATAAGCACATAATTGATGGCCGCATAGTTGAAGCAAAGAAAGCTGTCCCCAGGGATGATCAGCAGGTGATAAGCAGAACTTCTGGTAGCGTCCATGGCTCTCCTGGTCCTGGGCGCACAAAAAAGATTTTTGTTGGAGGTCTGCCTTCAAGCATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGCACAATTAATGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCTAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCCGTGGACAGAGTTCTTTATAAAACATTCCATGAACTCAATGGAAAAATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGAGCCAGCCGAAGCCCATTGTTAGGAACTAGTTTTGGTTTTAATAGGGCCAGTAGCTACCTAAACAGTTACGCGCCGGGTTATAACATGAGTCCAGTTGGAGGCTACGGGGTGAGGATGGATGGTAGGTTCAGTCCTCTTACAAGTGGTAGAAGTGGAGTTTCCCCCTTTGGCACCAGTGGTTATGGAATGGGACTGAATCTTGATGCAGGGCTGAGTGCAGGATATGGAGGGACTTCCAATTATGGAAGCAACCTCGGATATGGTCGGATGCTTAATCCTTTTTACAGTGGCAACTCAAGCAGATACACCACTCCTATAGGCTATAATGCTGGTAATGAGAGAAGCGATTCTCTAATGAACTCACCTTCTCGAAATGTCTGGGGAAATGGTGGCCTAAGTAATGCCAGTAACCAAGTCATTACCAGTGCTAGCTTGGGATCTGGAAGTGGTGCTTTTGGCGTTTCAATTAAGAATAATGGTGCAAATTGGGGTCAATCCTTTCCAACACAGGCTGGAGTGGCTGCTTCCGGGTATACCACTGGGATTAATGTTTATGAAGGCGGAGACAACAGTTTTGGGTTAGGCGGTACAGGTTATGGAAGAAATGGTAGTGTAGGTGTAAATTCATCTTCTACATTTTCTGCTTCAGCTGGTGTTTATGAAGGATCCTATGGGGATTTATACCATAACGGTTCAGTTTACAATGACTCAACTTGGCGGTCTACTGCTTCCGACCTAGATGGTGCTGGTTCATTTGGTTATGGACTTGGTGATATAGCCTCTGAGGATGCAGGAAAGAGTTCAGAGGGTTATATTGGAAACTACAATGTGTCAAGCAGACAACCTAACAGAGGAATTGCTGCCTAG 1461 0.4456 MRILTQSKEMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIETVIMRDRATGRARGFGFVVFADPAVAERVTMDKHIIDGRIVEAKKAVPRDDQQVISRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGASRSPLLGTSFGFNRASSYLNSYAPGYNMSPVGGYGVRMDGRFSPLTSGRSGVSPFGTSGYGMGLNLDAGLSAGYGGTSNYGSNLGYGRMLNPFYSGNSSRYTTPIGYNAGNERSDSLMNSPSRNVWGNGGLSNASNQVITSASLGSGSGAFGVSIKNNGANWGQSFPTQAGVAASGYTTGINVYEGGDNSFGLGGTGYGRNGSVGVNSSSTFSASAGVYEGSYGDLYHNGSVYNDSTWRSTASDLDGAGSFGYGLGDIASEDAGKSSEGYIGNYNVSSRQPNRGIAA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1636 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 175 IPR000504 GO:0003723
Lele02g1636 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 73 IPR000504 GO:0003723
Lele02g1636 486 Gene3D - 112 200 IPR012677 -
Lele02g1636 486 CDD RRM1_hnRNPA_hnRNPD_like 17 87 - -
Lele02g1636 486 FunFam Heterogeneous nuclear ribonucleoprotein 1 112 199 - -
Lele02g1636 486 SUPERFAMILY RNA-binding domain, RBD 8 113 IPR035979 GO:0003676
Lele02g1636 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 91 IPR000504 GO:0003723
Lele02g1636 486 MobiDBLite consensus disorder prediction 95 114 - -
Lele02g1636 486 Gene3D - 15 97 IPR012677 -
Lele02g1636 486 SUPERFAMILY RNA-binding domain, RBD 114 281 IPR035979 GO:0003676
Lele02g1636 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Lele02g1636 486 SMART rrm1_1 116 188 IPR000504 GO:0003723
Lele02g1636 486 SMART rrm1_1 16 87 IPR000504 GO:0003723
Lele02g1636 486 FunFam Heterogeneous nuclear ribonucleoprotein 1 14 96 - -
Lele02g1636 486 CDD RRM2_DAZAP1 113 192 IPR034131 GO:0003723
Lele02g1636 486 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1636 Lele-ChrLele02 20206476 20209271 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1636 11 225 Eukaryotic Initiation Factors Gene Family AT2G36660 29.237 1.21e-15 77.8