Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1605 ATGGATGAAGGTGAGGGAGGGTACGGCGAGAGTGGGGATCCGATGGATCAGTTCCATCGCAACGAAGCGATATCAGCTGTAGCTGATGATGGTTTTTTGGCCGAGGAGGACGACGATTACGAGGACCTTTACAACGACGTTAATGTAGGGGAAGGGTTTCTTCAGTCTTTAAGAAAGAACGATGATTCCGGGTTTCGGAATGAGGAGGCTGAGGAGAAGAAGACTCAATCAGCCGCCGTGCTACCGGAAACTGGCGGTGTTTCTATCCCAGGTGTTGGTGTCGGTGGTGGTAGTAGTACGGGTGGTGAGGTGGCTGCCGCTGCGGGGGTTATGGATGCTGCGTCTAGAGTTCCAGGGCGAGCAGATGGGATTCAAAATCAAGGTTTTAGAGGGAATGAGATGGGTTTGAAAGTTAGTGGTGGATCGGGTGCCTCTATGGGTGGTGGAGGAGGGATGAGGGTTGAATTAGGGCAACAAACAGGCAAGTTGAATGAGATAGAGGAGCAGAGTGCTAATAACAGTGCAGGAATACAAGGCATGGGGCAGCAACCACATGGTGGAGTTGTTGGGAACGTGGGAAATGAGAATTTGATGAGGCAAGGTGGAGGAGGAGGAAACCTCAATAGGACTGGTGGCAATGGGGTTGGGAATAATGCGAGTGGTGTCAATGTTGTCAATACTGGAGGAGGAGCTGCTGCTATTCCAGGAGGTGGTGGTGGTGGTGCTGGAAGTGGTGGTGGGGGCACCATTTTATTTGTTGGTGATTTACACTGGTGGACTACTGATGCTGAGTTGGAGGCAGAGCTTTGTAAGTATGGGCCAGTGAAGGAAGTGAAATTTTTTGATGAGAAGGCTAGTGGGAAGTCAAAAGGGTATTGCCAGGTTGAGTTTTATGATCCCTCTGCTGCATCTGCTTGTAAAGAAGGAATGCATGGGTATATGTTTAATGGGCGACCATGCGTTGTTGCTTTTGCTTCTCCTTTTACCGTTAAGAGAATGGGAGAGGCTCAGGTGAGCAGAAATCAACAGACGGCCCAATCTGCTACTTCTCAGACAAGGAGAGGACCTGTTGATTCAGGGGCTAAGACAGGTGGGAGTAACATTACTACTGGTGGAAACTACCAAGGTGGAGATGGCAACCGAGGCTATGGGAGAGGTAACTGGGGGAGAGGGAATAATCCTGGGATGGGAAATAGGGGCCCTGTTAATCCAATGAGGAACAGGGGTTGTGGGATGGGGGGTAGAGGCATCATGGGTAATGGTGGGAATGGATTTGGACAAGGTATTGGTGCCACCCCACCTCTGTTGCATCCTCAGTCAATGATGAATCCGGGTTTTGATCCTGCATTTGGTGGGCCTATGGGTAGAATGGGTGGCTATGGGGGCTTTCCAGGTGCTCCAACTCCTCCATTCTCTGGCATTTTGCCTTCGTTTCCTGCAGTTGGAGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCAGCCTTTTTCGGAAGAGGGATTCCCATGAATGGTATGGGAATGATGCCTACTTCAACAGTTGATGGGCCTAATATGGGAATGTGGTCAGATCCAAGTATGGGTGGATGGGGCGGTGAAGAGCATGGTGGTGGGAGGGCTGGAGAGTCCAGTTATGGTGAGGAAGCTGCATCAGAACACCAGTATGGTGAAGTGAGTCATGATAGAGGAGGTTGGCCAAATGCCATGAGGGAAAAAGATAGAGGATCAGAAAGGGACTGGTCTGGCTCTTCTGAACGAAGGTACAAGGATGATAGAGAACAAGGATATGAGAGAGATGCACCTAGAGAAAAAGACATGGGGCAGGACCATGAATGGTCTGAAAGAAGACATCGTGATGATAGAGAAGTAGGTCGTGAACGTGATAGGGAGCGTGACCGTGATCGTGAACGGTCTCGAGACCGTGACCGTGACCGTGAAAGGGATCGTGAAAGAGACCGGGAGCGTGATAGGTACAAGGAAGAAAGGGACAGATATGCTGACCATCATAGGTACAGAGATCGTGAAGCAGATCACGAGGATGAGTGGGAACGGGGAAGGTCATCAAGGACTCACAGCAAATCAAGATTATCACAAGAGGAAGATCATCATTCTAGATCTAGGGATGCTGATTATGGAAAGAGGAGACGTCTTACACCCGAGTAA 2166 0.4991 MDEGEGGYGESGDPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGFRNEEAEEKKTQSAAVLPETGGVSIPGVGVGGGSSTGGEVAAAAGVMDAASRVPGRADGIQNQGFRGNEMGLKVSGGSGASMGGGGGMRVELGQQTGKLNEIEEQSANNSAGIQGMGQQPHGGVVGNVGNENLMRQGGGGGNLNRTGGNGVGNNASGVNVVNTGGGAAAIPGGGGGGAGSGGGGTILFVGDLHWWTTDAELEAELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPSAASACKEGMHGYMFNGRPCVVAFASPFTVKRMGEAQVSRNQQTAQSATSQTRRGPVDSGAKTGGSNITTGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGCGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMNPGFDPAFGGPMGRMGGYGGFPGAPTPPFSGILPSFPAVGGVGLPGVAPHVNPAFFGRGIPMNGMGMMPTSTVDGPNMGMWSDPSMGGWGGEEHGGGRAGESSYGEEAASEHQYGEVSHDRGGWPNAMREKDRGSERDWSGSSERRYKDDREQGYERDAPREKDMGQDHEWSERRHRDDREVGRERDRERDRDRERSRDRDRDRERDRERDRERDRYKEERDRYADHHRYRDREADHEDEWERGRSSRTHSKSRLSQEEDHHSRSRDADYGKRRRLTPE 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1605 721 MobiDBLite consensus disorder prediction 1 23 - -
Lele02g1605 721 CDD RRM_CFIm68_CFIm59 251 324 - -
Lele02g1605 721 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 660 IPR034772 -
Lele02g1605 721 MobiDBLite consensus disorder prediction 57 78 - -
Lele02g1605 721 MobiDBLite consensus disorder prediction 335 376 - -
Lele02g1605 721 SMART rrm1_1 250 323 IPR000504 GO:0003723
Lele02g1605 721 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 320 IPR000504 GO:0003723
Lele02g1605 721 MobiDBLite consensus disorder prediction 554 721 - -
Lele02g1605 721 SUPERFAMILY RNA-binding domain, RBD 247 336 IPR035979 GO:0003676
Lele02g1605 721 Gene3D - 243 364 IPR012677 -
Lele02g1605 721 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 327 IPR000504 GO:0003723
Lele02g1605 721 MobiDBLite consensus disorder prediction 335 402 - -
Lele02g1605 721 MobiDBLite consensus disorder prediction 61 76 - -
Lele02g1605 721 MobiDBLite consensus disorder prediction 517 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1605 Lele-ChrLele02 19988851 19991016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1605 229 325 Eukaryotic Initiation Factors Gene Family AT4G34110 29.000 3.95e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1605 02 19988851 19991016 Lele02g1605 02 19988851 19991016 ECH
Lele02g1605 02 19988851 19991016 Lele03g1343 03 8111751 8113898 hybridization
Lele02g1605 02 19988851 19991016 Lele04g1595 04 20871645 20873807 hybridization