Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1556 ATGAGGATCACTGTAATGACTGCTGATGAACAAATTCTTACGTTGGATGTGGATCCCCATGAATCTGTGGAAAACGTCAAAGCATTGCTTGAGGTAGAGACACAAGTGCCTCTTAAGCAACAGCAACTTCTCTATAACGGAAGGGAGATGAGTAATCCTGAGAAATTGAGTGCTCTTGGTGTCAAAGATGACGACTTGGTGATGATGGTCTCTGCTTCTGCTCCTTCTGGTGCATCTGCCAATGATTTAGGCTTCAATCCTGATGGATCTGCTGTTAATCCTGCTGCTTTCCAGCAGCACATTAGACAGGATTCTAACCTGATAGGTCAGCTATTTCAGAATGATCCAGAGTTGGCACAAGCTATTCTAGGGAGTGATCTTAACAGAATACAGGAGATTTTACGAACCCGTCATCGACAGAGAGCTGAATTACAGCGTCAAAAAGAGGAGGAACTTGCTCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAGGAAGATTGAAGCTGCTATTCGTCAGAATGTCCTTGATAATTCCTTGGTTAAAGTAAACTACAATATTACCTTGTTAGATGAACTTAAGAAAGGAATTGATGAAAACTGGGCAGCTGCACTTGAACATAATCCCGAAGCTTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTCTGACTCTGACATTTGTTAAGCTTGTGTGTCATGCGATGAGAATTGCTGGCTGTTGCAGGAAAATTGTTAAGACTTCTGGATCAGCGTTACAAGGGGATCGCTCATGGAGTTGGCCAATCAGAGATATTAGGACGAATCCATGTAGCTCCAATCAAGAGGCTCCTTTTGTCGATGATCTTTTTACTGGAATGACAGATGTTTCTCTTATTATATATGTCTCCTTTCCAACTTTCTCTTTGTCTTGCATTATAGATTTAAAAGAAAATGTGTTGCGAGTCGGTGGAGGTGAAGTTTCTGTGCCATTCTTGCAAGAAAAAGACATACCATCTCGGTTTCTGGATGAAGAAAGGTACGCTAAGGAAGCGTCCAGCTCAGGCGCCCCTGCAACAGGAACAACAGATAGGAGTGGCAGTGTACCGAAAGGAGGCCAGTCTTCAGGAGGAGCTTCTGGAGGCACTTCTCAGGAGAGTGAATTTGAAGCAAAAGTTGCAAAGCTGGTGGAGTTAGGGTTTGGAAGAGAAGCAGTGGTACAAGCTCTTGAATTGTTCAATGGCAATGAGGATCAGGCTGCTGAGTTTCTGTTTGGGGGTTTCTAG 1305 0.4322 MRITVMTADEQILTLDVDPHESVENVKALLEVETQVPLKQQQLLYNGREMSNPEKLSALGVKDDDLVMMVSASAPSGASANDLGFNPDGSAVNPAAFQQHIRQDSNLIGQLFQNDPELAQAILGSDLNRIQEILRTRHRQRAELQRQKEEELALLYADPFDVEAQRKIEAAIRQNVLDNSLVKVNYNITLLDELKKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSLTLTFVKLVCHAMRIAGCCRKIVKTSGSALQGDRSWSWPIRDIRTNPCSSNQEAPFVDDLFTGMTDVSLIIYVSFPTFSLSCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEERYAKEASSSGAPATGTTDRSGSVPKGGQSSGGASGGTSQESEFEAKVAKLVELGFGREAVVQALELFNGNEDQAAEFLFGGF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1556 434 PANTHER ASPARTYL PROTEASE DDI-RELATED 316 430 - -
Lele02g1556 434 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
Lele02g1556 434 Pfam Aspartyl protease 196 237 IPR019103 GO:0004190|GO:0006508
Lele02g1556 434 Coils Coil 130 150 - -
Lele02g1556 434 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Lele02g1556 434 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 390 433 IPR015940 -
Lele02g1556 434 Gene3D - 367 433 - -
Lele02g1556 434 MobiDBLite consensus disorder prediction 355 393 - -
Lele02g1556 434 Gene3D - 1 82 - -
Lele02g1556 434 MobiDBLite consensus disorder prediction 361 393 - -
Lele02g1556 434 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Lele02g1556 434 Gene3D Acid Proteases 197 238 IPR021109 -
Lele02g1556 434 SMART uba_6 395 432 IPR015940 -
Lele02g1556 434 CDD UBA_scDdi1_like 396 431 - -
Lele02g1556 434 SMART ubq_7 1 72 IPR000626 GO:0005515
Lele02g1556 434 Pfam UBA/TS-N domain 396 430 IPR015940 -
Lele02g1556 434 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Lele02g1556 434 SUPERFAMILY UBA-like 383 433 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1556 Lele-ChrLele02 19575276 19581112 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1556 02 19575276 19581112 Lele02g1556 02 19575276 19581112 ECH
Lele02g1556 02 19575276 19581112 Lele04g1545 04 20425151 20430763 hybridization