Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1544 ATGCAGTCCAAGTCTAAAACTGCAAATCAACTAAGGACTGATCAACATTCTTTTCCGCCGAATAATGTTTATTCTGAGCCTTGGTGGCGTGGCGTTGGGTACAATCCCGTGACCCAAGCAATGGCTGGGGCAAATGCATCTAATTCATCCTCACTTGAATGCCCTAATGCTAATTCTGAATCCAATGATGGTCAATCTTTGACCAATAGTGGTTTGAATGAGGAAGATGATGATGCCACCAAAGAATCACCAGCTGCTGCTCCCAATCAATCAGGAAATTACGCTCAAGAACACCAAGGGATGCAGCATGCTTCATCGTCTGCACCATCCATGCGAGATGAATGCTTTACACAGGCTCCGCAGCTCGAACTTGTTGGTCATTCAATTGCATGTGCTTCACATCCTTATCAGGATCCATATTTTGCGGGAATGATGGCGGCTTATGGTCCCCACCAGCTGGGATATCCTCCTTTTATGGGAATGCCACAGGCCAGAATGCCTTTGCCCCTTGAGATGGCACAGGAACCCGTTTATGTAAATGCTAAACAATACCCGGCAATTCTTAGGCGCAGGCAGGCTCGTGCGAAGGCAGAGCTTGAAAGGAAGCTAATAAAAGTTAGAAAGCCATACCTTCATGAATCTCGGCATCGGCATGCAATGAGGAGGGCAAGGGGTACTGGAGGTCGCTTTGCAAAGAAAAATGATGGTACTGAGGCCTCAAATCACTCTGTTAAAGAAAAGGATGTGGGATCTGGTCCCGTGGTATCTTCACAATCAGTTAGTTCATCTGGTTCTGAACCTTTACCCTGTGAGTCTGCTGAAACCTGGAACTCTCCTAATGTGCAACAAGAGGCCAGAGGATATAAGCTTCCTGACCGATATGAAGCACACAACTATGCGAACAATAGTGGCCCTTATCATAATCATAGCGGCCTGCAATCTTCTGCTTATCATTTGCACTCAGGTGAAAGAGTCGATGGAGGGGACTGTTCAGGACAACAATGTGGGAGTATCTCTTCCGAACACACTTCACGTAGGCGTCTTGCAATTCAGTAG 1056 0.4669 MQSKSKTANQLRTDQHSFPPNNVYSEPWWRGVGYNPVTQAMAGANASNSSSLECPNANSESNDGQSLTNSGLNEEDDDATKESPAAAPNQSGNYAQEHQGMQHASSSAPSMRDECFTQAPQLELVGHSIACASHPYQDPYFAGMMAAYGPHQLGYPPFMGMPQARMPLPLEMAQEPVYVNAKQYPAILRRRQARAKAELERKLIKVRKPYLHESRHRHAMRRARGTGGRFAKKNDGTEASNHSVKEKDVGSGPVVSSQSVSSSGSEPLPCESAETWNSPNVQQEARGYKLPDRYEAHNYANNSGPYHNHSGLQSSAYHLHSGERVDGGDCSGQQCGSISSEHTSRRRLAIQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1544 351 MobiDBLite consensus disorder prediction 210 227 - -
Lele02g1544 351 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 230 IPR001289 GO:0003700|GO:0006355
Lele02g1544 351 Gene3D - 173 235 - -
Lele02g1544 351 MobiDBLite consensus disorder prediction 1 22 - -
Lele02g1544 351 MobiDBLite consensus disorder prediction 210 282 - -
Lele02g1544 351 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Lele02g1544 351 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Lele02g1544 351 MobiDBLite consensus disorder prediction 44 113 - -
Lele02g1544 351 MobiDBLite consensus disorder prediction 332 351 - -
Lele02g1544 351 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Lele02g1544 351 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Lele02g1544 351 MobiDBLite consensus disorder prediction 228 245 - -
Lele02g1544 351 MobiDBLite consensus disorder prediction 323 351 - -
Lele02g1544 351 MobiDBLite consensus disorder prediction 84 113 - -
Lele02g1544 351 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Lele02g1544 351 MobiDBLite consensus disorder prediction 44 73 - -
Lele02g1544 351 MobiDBLite consensus disorder prediction 252 282 - -
Lele02g1544 351 MobiDBLite consensus disorder prediction 1 31 - -
Lele02g1544 351 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 22 284 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1544 Lele-ChrLele02 19487811 19489898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1544 1 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.000 1.64e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele02g1544 CBFB_NFYA 1.2e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1432 25 10530172 10538425 Lele02g1544 02 19487811 19489898 CCT
Lele26g1461 26 10370562 10379590 Lele02g1544 02 19487811 19489898 CCT
Lele27g0650 27 14436877 14445064 Lele02g1544 02 19487811 19489898 CCT
Lele28g1446 28 10617288 10619549 Lele02g1544 02 19487811 19489898 CCT
Lele02g1544 02 19487811 19489898 Lele02g1544 02 19487811 19489898 ECH
Lele01g1275 01 7758477 7761096 Lele02g1544 02 19487811 19489898 ECH
Lele02g1544 02 19487811 19489898 Lele03g1288 03 7732177 7734688 hybridization
Lele02g1544 02 19487811 19489898 Lele04g1532 04 20337990 20339898 hybridization