Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1528 ATGCATGGGGATAAAACACAGGAGATAATTATGCGCTGAGCATCTGTTGGAAGAGGATTTTCTTCATCTGCTTCGAGGATGTCCTACTCCAGAAGATCAAGGTATTCTCAATCACCTTTGTACAAGCGATATGGTAGGTCTGTTTCCAGGTCTCTGTCAAGGTCAAGATCAAGATCAAGGAGCTTTTCAAGGAGCCCATCAAGAGAAGCAGAGAATCCTGGTAATAACTTGTATGTGACAGGGTTGTCTGCTCGGATTACCAAGAGAGAATTGGAGAAGCATTTTGCAAGCGAGGGAAAAGTGATTGACGTTCACCTGGTTGTTGATCCGTGGACAAGAGAATCGCGAGGGTTTGGGTTTGTGACGATGGAAACTGTTGAGGATGCTGACCGATGTGTAAAGTATCTGGATCGCTCTGTACTAGAAGGGCGTGTCATCACAGTAGAAAAGGCTAGAAGAAGGCGGGGTCGAACCCCAACACCTGGAAGGTATCTTGGGCTAAGGACTGTTCGAGGGCAAAATCGCTCTTCAAGCTATTCTCCTCGGCGCTCCCCTAGTTATTCTCCCTACAGAAGAAGCTACAGTCGGTCACCATATTCTTCTGATCGAAGTAGGAGTCGCTCTTATTCTCCTTATTATCGCAGTCGACGGAGGTCTTACTCCCCATATTGTAGTCGGGATAGATCTTATAGCCCTTATGATCGACGCAGATCCTATTCTCCTTATTATCGACACAGGTCATACTCTCGATCTCGGTCACCATACAGCAGGTCACCTGTGAGGAGGAGGCGAGATAGATCATACTCTCCTTATGATTCACCTGATGGTCGCTATTACAGAAGGTACCATTACATGTCCATTTCCCCAAGGCCAAGGAGAAGTTCAAGGAGGTATTCCCGCAGTCTCTCCCCGGTGAAGAGGAGGAGCTCAAGAAGGAGCTATTCTCGGAGTCTGTCCCCTAGACCGAGGAGTTCACGAAGAAGGAGCTACTCACCAAGTCCTTCTCCTAGACCAAGGAGGAGTTCACGGAGGAGCTATTCTCGCAGCATTTCTCCTAGGTCAAGAGGCAGTAGGAGAGGTGGTTCTTCAAAACGTGGGCGCACACCAGTTAGCGATAGAAGCTACTCAAGAAGTCCAAGTGTGAGTGCAAGTTCAAGATCAGTATCAAGGTCTCTTACTCCCAGATCAGCATCCCCTTGA 1200 0.48 MHGDKTQEIIMRXASVGRGFSSSASRMSYSRRSRYSQSPLYKRYGRSVSRSLSRSRSRSRSFSRSPSREAENPGNNLYVTGLSARITKRELEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMETVEDADRCVKYLDRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVRGQNRSSSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPYYRSRRRSYSPYCSRDRSYSPYDRRRSYSPYYRHRSYSRSRSPYSRSPVRRRRDRSYSPYDSPDGRYYRRYHYMSISPRPRRSSRRYSRSLSPVKRRSSRRSYSRSLSPRPRSSRRRSYSPSPSPRPRRSSRRSYSRSISPRSRGSRRGGSSKRGRTPVSDRSYSRSPSVSASSRSVSRSLTPRSASP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1528 399 Gene3D - 20 159 IPR012677 -
Lele02g1528 399 CDD RRM_RBMX_like 74 151 - -
Lele02g1528 399 SMART rrm1_1 76 149 IPR000504 GO:0003723
Lele02g1528 399 SUPERFAMILY RNA-binding domain, RBD 58 166 IPR035979 GO:0003676
Lele02g1528 399 MobiDBLite consensus disorder prediction 367 399 - -
Lele02g1528 399 MobiDBLite consensus disorder prediction 20 76 - -
Lele02g1528 399 MobiDBLite consensus disorder prediction 152 399 - -
Lele02g1528 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 146 IPR000504 GO:0003723
Lele02g1528 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 153 IPR000504 GO:0003723
Lele02g1528 399 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 69 318 - -
Lele02g1528 399 MobiDBLite consensus disorder prediction 170 208 - -
Lele02g1528 399 MobiDBLite consensus disorder prediction 258 279 - -
Lele02g1528 399 MobiDBLite consensus disorder prediction 315 340 - -
Lele02g1528 399 MobiDBLite consensus disorder prediction 293 314 - -
Lele02g1528 399 FunFam Serine/arginine-rich splicing factor SR45a 28 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1528 Lele-ChrLele02 19372237 19376805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1528 76 190 Eukaryotic Initiation Factors Gene Family AT2G36660 31.034 8.08e-08 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1528 02 19372237 19376805 Lele02g1528 02 19372237 19376805 ECH
Lele02g1528 02 19372237 19376805 Lele03g1272 03 7617851 7620924 hybridization
Lele02g1528 02 19372237 19376805 Lele04g1515 04 20213264 20216163 hybridization