Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1520 ATGAAGTGGGAAACGGGAATGTTCTCACCCGGACAATACATCGCCAATTCCAACACCAGCTGGATTGTTGAAGATAATCGGAATTCCAAATGGACTCGTGCTGAGAACAAACTCTTCGAGAATGCTCTCGCGGTTTACGATAAGGATACACCAGATCGGTGGCAGAAAGTCGCCGCAGTGATCCCAGGGAAGACGGTCGTTGACGTGATGAACCAGTACAAACAGCTGGAAGATGATGTTTGTGACATAGAAGCTGGTTTGGTCTCAGTTCCTGACTATTACGCCAACAATACTCCTTCCTCACCTTTCACCTTGGACTCTTGGGCTAGCTTTTCTTCTGGTTATGATCCCTCGCTCGGAGTCCATGGAAAGAGACCCTCCTCTGGAAGATCCTCAGAGAATGAAAGGAAGAAAGGAGTCCCTTGGACCGAAGAAGAACACAAACTGTTTCTTCTGGGCCTGAAGAAGCATGGGAAGGGAGATTGGAGGAACATATCAAGGAACTTTGTGATGACTCGAACACCGACTCAAGTAGCTAGTCATGCTCAGAAATACTTCATAAGGCAACTTTCTGGAGGGAAAGACAAGAGAAGAGCAAGCATCCATGACATAACCACTGTGAACCTCACAGAAACTTCAATTAAAGCTTCTTCTCATTCACGAGACCCCACCAAGAAGTCCTGTTCTTCTTCTTCTTCTTCACCGCCACAACAACAGAACCACATGAACATGATGATGCTCTCACACTCATCACAGCAGCAGCAGAATTCTGCAGTTCCCAGCAGAACACAGTTTCAGTGGACCCAACAGCCAATAATGGCTACTTCTCTGAGTGATCCTGCACTCGATGAACTGTTCATGTCTGATTATTCTTATGGGATTGGTGATGACTTGTCATCTTCCTTTGGGTTTACAATGCAGGGCCAGAATCTGCACACAAGTTCTCTTCTTCATCATGAATCTTCTTCCTACTTAGGACCTCACAGTCAAAGCATGGGATGTAAGTTTTCAGAATTAGCCATGGATGTTGAAAGACAAGACTTTAGTGATGGTGAGTGA 1059 0.4561 MKWETGMFSPGQYIANSNTSWIVEDNRNSKWTRAENKLFENALAVYDKDTPDRWQKVAAVIPGKTVVDVMNQYKQLEDDVCDIEAGLVSVPDYYANNTPSSPFTLDSWASFSSGYDPSLGVHGKRPSSGRSSENERKKGVPWTEEEHKLFLLGLKKHGKGDWRNISRNFVMTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSIKASSHSRDPTKKSCSSSSSSPPQQQNHMNMMMLSHSSQQQQNSAVPSRTQFQWTQQPIMATSLSDPALDELFMSDYSYGIGDDLSSSFGFTMQGQNLHTSSLLHHESSSYLGPHSQSMGCKFSELAMDVERQDFSDGE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1520 352 MobiDBLite consensus disorder prediction 212 240 - -
Lele02g1520 352 Gene3D - 23 90 - -
Lele02g1520 352 SMART sant 27 79 IPR001005 -
Lele02g1520 352 SMART sant 138 188 IPR001005 -
Lele02g1520 352 MobiDBLite consensus disorder prediction 118 140 - -
Lele02g1520 352 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Lele02g1520 352 Gene3D - 140 190 - -
Lele02g1520 352 SUPERFAMILY Homeodomain-like 136 189 IPR009057 -
Lele02g1520 352 CDD SANT 141 186 IPR001005 -
Lele02g1520 352 FunFam Transcription factor SRM1 17 90 - -
Lele02g1520 352 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Lele02g1520 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Lele02g1520 352 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 266 IPR043363 -
Lele02g1520 352 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Lele02g1520 352 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Lele02g1520 352 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Lele02g1520 352 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Lele02g1520 352 CDD SANT 30 76 IPR001005 -
Lele02g1520 352 FunFam transcription factor MYB1R1 140 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1520 Lele-ChrLele02 19307744 19309585 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele02g1520 Myb_DNA-binding 1.9e-05 CL0123