Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1503 ATGGGGAAATCAGCGTTTCATGATTCTCTCAAAGCTCTGGAAGCTGATATTCAGTACGCCAATGCTTTGTTATTAGGGTATCCCAGGGATAAAGATGGAGCATGCTTTCAAATGAGACTGTCATACGGTCCAGGTGCTACCTTATTTCTTTTTCTTGTTCAATGGGCGGATTACCACCTGGTTGGTGCTCTGGGTTTGCTGAGAGTTCTAATTTATATGACCTATGGAGATGGGAAGACCACCATGTCAATATATGAAAGGAAAGCAAGCATTAAAGAGTTTAACTCGGTGATATTTCCTGCTTTATTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAAGAAACAAAATGAAGTATATGCTATCAGATATAAGAAAGAAAAGCAATCAAAATTTGACATGGAAAGAGAAGAGGAATGTGGAATTTGCATGGAGGTAAAGGCAAAAGTTGTGCTGCCTAATTGCTGCCATTGCATGTGTTTGAAATGCTTCAGGGATTGGTGTGAGAGATCCGAGTCATGCCCTTTTTGCCGTGGAAATCTTAAAAGGGTCAACTCAGGTGACCTTTGGAATTACATAGATGATGGTGATGCCATGGATCTCAGAACGATTTTCAAAGAAAACCTTAAGAGGCTGCATTTGTACATAGAGAAGTTGCCTATTGTCGATCCGGACCCCATGCATGTCTCTTATGAACCTTGTAGGAGTTAA 714 0.4076 MGKSAFHDSLKALEADIQYANALLLGYPRDKDGACFQMRLSYGPGATLFLFLVQWADYHLVGALGLLRVLIYMTYGDGKTTMSIYERKASIKEFNSVIFPALLQLEKGITDLEEKKQNEVYAIRYKKEKQSKFDMEREEECGICMEVKAKVVLPNCCHCMCLKCFRDWCERSESCPFCRGNLKRVNSGDLWNYIDDGDAMDLRTIFKENLKRLHLYIEKLPIVDPDPMHVSYEPCRS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1503 237 ProSiteProfiles Zinc finger RING-type profile. 141 179 IPR001841 -
Lele02g1503 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 189 IPR013083 -
Lele02g1503 237 PANTHER RING FINGER PROTEIN 41, 151 4 226 - -
Lele02g1503 237 Pfam Ring finger domain 140 179 IPR001841 -
Lele02g1503 237 FunFam RING/U-box superfamily protein 122 188 - -
Lele02g1503 237 SUPERFAMILY RING/U-box 129 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1503 Lele-ChrLele02 19192850 19194987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1503 103 200 C3H Transcription Factor Family AT5G01960 27.358 2.13e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1503 02 19192850 19194987 Lele02g1503 02 19192850 19194987 ECH
Lele02g1503 02 19192850 19194987 Lele03g1245 03 7430852 7432997 hybridization
Lele02g1503 02 19192850 19194987 Lele04g1487 04 20037622 20039770 hybridization