Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1488 ATGTGCAGTGGTTCCAAGAGGAAACCCTCTCAAGCAGGTTTCGTTATGGAAGGTGAATATGGGAAACAAGAGGGGCTGCGTCATAATAAGACTTCTTCTGTGTTGCTTGAACTTGCAGCCTCAGATGATGTTGTGAGTTTCAAAGATGCTGTTGAGCAAGAGGGTATTGATGTTGATGAGGCGTGCTTGTGGTATGGAAGGAGGATTGGCTTAAAGAAATTGAGCTATGAAGAGAGGACTCCTCTCATGATTGCTGCTATGTTTGGAAGCAAGGTTGTATTAAGTTATATACTCGGAACTGGTCGTGTTGATGTTAACCGGACTTGTGGATCAGATGGGGCTACCGCCCTTCATTGTGCTGTTGCCGGTGGTTCAGCCTCATCCCCTGAGGCTGTTAAGCTTTTGCTTGATGCATGTGCAGATGTTAGTGCTGTTGATGCTAATGGTAACCAACCTTGTGACTTGATTGTCTCCGGGGTTAATCCGATCTTCATTTCGAGGAAGAGGATCCTACAAGCCATACTGAAAGGTAAGGATGTTATTGATGAGGCATGTCTGTCATTTGAGGATACAGCTAGCCAGATGGAGGAACAGCAACTGCAACAGCCAGATATGGCTGCTTCTCGTGTTTCGAAAGTCGGGACTGAGAAGAAAGATTATCCTATTGATCTTTCTCTTCCTGACATAAAGAGTGGGATTTATGGTACTGATGAGTTTAGGATGTATACGTTCAAAGTAAAGCCTTGCTCAAGGGCCTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCCGGTGAAAATGCAAGGCGACGGGATCCTAGAAAATATCATTATAGCTGTGTCCCTTGCCCAGAGTTTCGGAAGGGATCATGCAGCAAGGTAGATGCCTGCGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCACAGTATCGGACACGGCTTTGCAAGGATGAAGCTGCTTGCACCAGAAGAGTTTGCTTTTTCGCTCACAAGCCGGAGGAGCTTCGCCCGTTGTATCCTTGTACTGGTTCAGCTATACCTTCTCCCAGATCATTTTCATCTAGTTCTTGTTCATTGGATATGGGATCGCTTAGCCCTCTCTCACTGAGTTCTTCATCTGTCATGATACCTCCAGTCTCAACACCGCCTCTGACTCCTTCTGGTGCATCTTCTCCTGTTGGTGGAACCATGTGGCAGGCCCAATCTAATGGTGTAGTGCCTACCCTGCAACTGCCAAGAAGCAGACTAAAAACTGCTTCAAATGCTAGAGATGTTGATTTAGATATTGAGTTACTTGGACTTGAAAATCACCGGCGTAGGCAGCAGATAATGATGGATGAGATTTCTGGTCTTTCATCACCATCAAGCTGGAATAATTCCATGCATGATAACCATTCTTTTCCGGTCTCTTTCAGTGATCAAGCTGGAGAGCTGAATAATAGGCTTGCAGCGATGAAGCCTACCAACCTTGATGACATTTTCGGGTCAGTTGACCCATCAATTTTGCCTAAATTACAGGGAATTTCACTAGACACTGCTGGACCTCAGTTGCAATCTCCAACTGGGTTCCAGGCGCTGCAGAATGCGAATCTGCATCTGCGAAACTATTCTTCTGGCCTCTCCAATGCAAATGGGATGGGGTCGCCGTCTTCTGTGAATGATCCACCTGTATCAGCAGCAACCACAATGGCCTTGAATGCAAGACTTGCTGCATTTTGTAAGAGAAGCCAGAGCTTTATTGAGCGCAGCAGCGCATTAAACCGTCATCCAGAGCTTTCTTCTCCGGTTTCTTCAACAACAAAAGCTTCTGCTGTCTTATCAGACTGGGGATCCCCTGATGGAAAGTTGGACTGGGGCATCCATGGAGAAGAGTTGAATAAACTGAGGAAATCTGCTTCTTTCGGATTTCGAAGCAGTAGGAGTACCCGAGTGCCAGCAAATTTCGATGGACCAGATGTTTCTTGGGTTCATTCAATCGTAAAGGATGCTGCGCCGCCAGAATCTGGTCAATTTAGCGTTGAAGAACAGCAAAAGCAGCAGATGCAATGCCATCGTAACAATGGCACAGATGCGGTTCCAGCTTGGATGGAACAATTTAACATTGAGCAGGAGCAGATGGTAGCATGA 2139 0.4624 MCSGSKRKPSQAGFVMEGEYGKQEGLRHNKTSSVLLELAASDDVVSFKDAVEQEGIDVDEACLWYGRRIGLKKLSYEERTPLMIAAMFGSKVVLSYILGTGRVDVNRTCGSDGATALHCAVAGGSASSPEAVKLLLDACADVSAVDANGNQPCDLIVSGVNPIFISRKRILQAILKGKDVIDEACLSFEDTASQMEEQQLQQPDMAASRVSKVGTEKKDYPIDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKVDACEYAHGIFECWLHPAQYRTRLCKDEAACTRRVCFFAHKPEELRPLYPCTGSAIPSPRSFSSSSCSLDMGSLSPLSLSSSSVMIPPVSTPPLTPSGASSPVGGTMWQAQSNGVVPTLQLPRSRLKTASNARDVDLDIELLGLENHRRRQQIMMDEISGLSSPSSWNNSMHDNHSFPVSFSDQAGELNNRLAAMKPTNLDDIFGSVDPSILPKLQGISLDTAGPQLQSPTGFQALQNANLHLRNYSSGLSNANGMGSPSSVNDPPVSAATTMALNARLAAFCKRSQSFIERSSALNRHPELSSPVSSTTKASAVLSDWGSPDGKLDWGIHGEELNKLRKSASFGFRSSRSTRVPANFDGPDVSWVHSIVKDAAPPESGQFSVEEQQKQQMQCHRNNGTDAVPAWMEQFNIEQEQMVA 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1488 712 FunFam Zinc finger CCCH domain-containing protein 66 236 304 - -
Lele02g1488 712 Gene3D - 27 162 IPR036770 -
Lele02g1488 712 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Lele02g1488 712 SMART ANK_2a 112 144 IPR002110 GO:0005515
Lele02g1488 712 SMART ANK_2a 77 107 IPR002110 GO:0005515
Lele02g1488 712 Pfam Ankyrin repeats (3 copies) 70 144 IPR002110 GO:0005515
Lele02g1488 712 SMART c3hfinal6 313 336 IPR000571 GO:0046872
Lele02g1488 712 SMART c3hfinal6 278 304 IPR000571 GO:0046872
Lele02g1488 712 PANTHER UNKEMPT FAMILY MEMBER 37 666 IPR045234 -
Lele02g1488 712 ProSiteProfiles Zinc finger C3H1-type profile. 283 305 IPR000571 GO:0046872
Lele02g1488 712 ProSiteProfiles Ankyrin repeat region circular profile. 112 146 - -
Lele02g1488 712 Gene3D - 281 341 - -
Lele02g1488 712 SUPERFAMILY Ankyrin repeat 38 166 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1488 Lele-ChrLele02 19081703 19083841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1488 33 707 C2H2 Transcription Factor Family AT5G12850 39.028 8.66e-143 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele02g1488 Ank_4 2.1e-07 CL0465