Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1452 ATGTTACCGATCGCTGAGCCGCCGATGACTCCTCTGCATGAGTTGAGCTGCTCCATTCCTGATTATGTAAAGTTTGGCCCTATATTGCCTAAGAGTGCTGGGTTTTCTCCTGTTCTAAAAGATGGTGCAAATGAAACTATCAGTACCCTTGGAGAGTATGAAGATTCAGGTTACGATATCAATGAATCATACATGGATCCAGGTAGAAAAACTCAAACTATTGTGTCTCCTAGAATGAAAACTATCAAGGGTGAGGATATTGAACCAAAAATACACACTAAAGGAGAACCCAAATCTTTGCGCTTATTGTCTAGGCGTTTTTCAGACTCAAGTATTTCCAACTCTTCACCAATATCTCCACACATGAGTGCTGATCACAGCATCAGCTCAGAAGATTCTGATAACGAAATAATGAGCCATGAGGGAAATAGCAGCACTAGTTTATCACTGAAATCAGAGAAGAATACCGTTCAATCAAGACCACCCAATGATTTTGTTTGCCCTATCACAGGCCAGATATTTTGTGATCCAGTGGCTCTTCTTGAAACAGGTCAAACATATGAAAGAAAAGCAATTCAGGAATGGCTCAAAACAGGAAATACGACATGTCCCATTACAAGGCTATCTCTCTCTGCTAGCATACTACCTAAAACAAACCATGTCTTGAAGAGATTGATAACATCATGGAAAGAACAACATCCAGAACTAGCTCAGGAGTTCCCAGTGGTCTCTAATATGCACAAAACAGCTGACTCACCAGCTCATAAGAAGAAAGCAAATGATTATATTAGACAAAGGAGCAAAAAATTCATGCAGGTCTCTGTTGCATTATCACCAACTAGTGTAATATCTCAAGCTGCAGTTGAAACAGTTATAAATTGTTTGAAACCTTACATTTCAAGTTTCTGCACATCGGAAGACTTGCAAGAATGTGAAGATTCTGTATTGGCAATAGCTAGATTATGGAAGGACTCAAAGAATGATCCTCATATCCATTGTTATTTATCAAACCCAACTTTTATAAATGGTTTAGTTGAAATACTTTCAGCTTCTCTAGATAGAGAAGCTCTGATAACATCAATTTATATCCTGTCTGAGTTAATTTTTGCAGATGTAAGTGTTGGAGAAATACTCTCCAATGTCGATTCTGATTTCGATTGCCTCCCTACTCTGCTTAGGAATGGTTTAATTGAGGCTGCTGTTCTAATTTACCAAATGAGGCCGGTTTACGACCAACTTTCTTCTCATGAACTGATACCTTCCATTGTTCAGCTGATCCAGAACAAAAATGAGGAGTTCGACGATCTTCGGTTCCTTATCGATCCCCGAGATTTGGCTGTGGCGATTCTTGAGCAGATTTTATTAGGAGGGAATGAATATAACAGGAGGACAATGTGCAACAAGATATTGCCGATTATCAAGGATGAGGGAGCCTTTAGTACCATGCATACATTTCTTTTGTATCTTCATATGGCTCCTATGGATCATCAACTTGCAGTTGCTAGTCTTTTGCTTCAGCTTGATGACCTTTTGACATCAATTCTAGTTGAGCCACGAAACGAGAGCATTTTCAGGGAAGAAGCTGTAGAGGTACTGATAGAATCACTTTGGCGAAAGGACTTCTCAAATAGTCAGACAAAGGCTTTAGATTCTTTACTGCTTCTTATTGGCCATCTCACTTCTGCAGGAAAGTCATACACTGAAGCTTGGCTGCTTAAGACTGCAGGATTTGACCAACCTTACAATGCTCTAATGACAGCTGAGCACTTGGAAAAATATGACCACGATTTGATGGAAACAAAGGTTTGGAGCTATATATATATATATAATGAAGAAGATGCTATGAGCTCTTGGCAGAAAAGGGTGGCTTTTGTTCTTTGCAACCATGAAAAGGGTTCCATATTTAAAGCCTTAGAAGAATGCCTCAAGAGTACTTCCTTAGAGACAGCAAAACATGCCTTGTTGCCACGTGGCTCACACACATGCTCTCAACCATTCCCGATACCGGCTCCCAATGTTTCAGTTGCCCTTGAAGCACTAGGATCTTATGCCAAAAGCATCTATAAAACATTGAGAAAGCTGAAGAAATATTCTTTTGTGGCAGCCGACATTATGAAAGCCTTAATGAACTTAAAATCCATCGATGTGACAGCATCTTGGAGTTGTAAGGAAGTCGTTGAGTTAGATTTGAGCTCAAATGGAGATGTACTTTCTTTGCTCTATGTGAATGGTCGGGTCTTGAGTGGACACCCTGATGGAAGCATGAAGGTGTGGGATGCTAGTAAGAGAGTATTAAGATTGATTCAAGAAACTCGTGAGCACACTAAAGCTGTAACATGTCTCAACTCTTCGGGCGATAAACTGTACAGTGGTTCCTTAAACAGAACCATCCGGGTATGGACGATTAAGTATGATGAGATTCAATGTATTCAAGTTCATGATATCAAAGATGCGGTGTATGAGTTGATAGCAAATGATAAATTAGCATGCTACGTAACTCAAGGAACTGGAGCTAAGGCAATGTTCAGGGACAAGAAAATTGCTGGGAAAGCAAACCATCCACTTCCTTCTGATTTATTGATGATTTTCTTATTGCTGGTGGTTCTTTGGCTGATTCAACCGCGGGAAAGGGTTGCTTCCATCAAAATGGCTGGTTGTCACACAAAAATCACGTCACTACCTTCAGATTCAGATGGTGTTATGCTTTTTGTTGGTTCCTCTGACTGCAAGATCCAGGATTGGGCTTTGGATTAA 2754 0.4009 MLPIAEPPMTPLHELSCSIPDYVKFGPILPKSAGFSPVLKDGANETISTLGEYEDSGYDINESYMDPGRKTQTIVSPRMKTIKGEDIEPKIHTKGEPKSLRLLSRRFSDSSISNSSPISPHMSADHSISSEDSDNEIMSHEGNSSTSLSLKSEKNTVQSRPPNDFVCPITGQIFCDPVALLETGQTYERKAIQEWLKTGNTTCPITRLSLSASILPKTNHVLKRLITSWKEQHPELAQEFPVVSNMHKTADSPAHKKKANDYIRQRSKKFMQVSVALSPTSVISQAAVETVINCLKPYISSFCTSEDLQECEDSVLAIARLWKDSKNDPHIHCYLSNPTFINGLVEILSASLDREALITSIYILSELIFADVSVGEILSNVDSDFDCLPTLLRNGLIEAAVLIYQMRPVYDQLSSHELIPSIVQLIQNKNEEFDDLRFLIDPRDLAVAILEQILLGGNEYNRRTMCNKILPIIKDEGAFSTMHTFLLYLHMAPMDHQLAVASLLLQLDDLLTSILVEPRNESIFREEAVEVLIESLWRKDFSNSQTKALDSLLLLIGHLTSAGKSYTEAWLLKTAGFDQPYNALMTAEHLEKYDHDLMETKVWSYIYIYNEEDAMSSWQKRVAFVLCNHEKGSIFKALEECLKSTSLETAKHALLPRGSHTCSQPFPIPAPNVSVALEALGSYAKSIYKTLRKLKKYSFVAADIMKALMNLKSIDVTASWSCKEVVELDLSSNGDVLSLLYVNGRVLSGHPDGSMKVWDASKRVLRLIQETREHTKAVTCLNSSGDKLYSGSLNRTIRVWTIKYDEIQCIQVHDIKDAVYELIANDKLACYVTQGTGAKAMFRDKKIAGKANHPLPSDLLMIFLLLVVLWLIQPRERVASIKMAGCHTKITSLPSDSDGVMLFVGSSDCKIQDWALD 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1452 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 243 IPR013083 -
Lele02g1452 917 MobiDBLite consensus disorder prediction 109 160 - -
Lele02g1452 917 Pfam U-box domain 162 233 IPR003613 GO:0004842|GO:0016567
Lele02g1452 917 Gene3D - 708 917 IPR015943 GO:0005515
Lele02g1452 917 SUPERFAMILY WD40 repeat-like 732 914 IPR036322 GO:0005515
Lele02g1452 917 Pfam WD domain, G-beta repeat 768 800 IPR001680 GO:0005515
Lele02g1452 917 ProSiteProfiles U-box domain profile. 160 236 IPR003613 GO:0004842|GO:0016567
Lele02g1452 917 MobiDBLite consensus disorder prediction 109 126 - -
Lele02g1452 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 771 803 IPR001680 GO:0005515
Lele02g1452 917 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 120 458 - -
Lele02g1452 917 SMART WD40_4 874 915 IPR001680 GO:0005515
Lele02g1452 917 SMART WD40_4 721 759 IPR001680 GO:0005515
Lele02g1452 917 SMART WD40_4 764 801 IPR001680 GO:0005515
Lele02g1452 917 SUPERFAMILY RING/U-box 149 234 - -
Lele02g1452 917 SUPERFAMILY ARM repeat 283 646 IPR016024 -
Lele02g1452 917 MobiDBLite consensus disorder prediction 139 160 - -
Lele02g1452 917 SMART Ubox_2 164 229 IPR003613 GO:0004842|GO:0016567
Lele02g1452 917 CDD RING-Ubox_PUB 165 207 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1452 Lele-ChrLele02 18756034 18762451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1452 130 233 U-box Gene Family AT1G23030 41.346 2.75e-15 78.2