Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1442 ATGCAACACGGAGACTATAGCTCATCTCCTTATTATCAATTCCCTCCGACGCAGAACCCAATTCCCAATCCTAACCCTAACCCTATCCCTATCCCTCCCGATTCAGTCCCCAATCCGTACGCCTCAGCTCCACCTTTCACCTCTGATTACTCGCCTTACGCCTCTACTTATCCTCCATACCCTCAAAATCCCGATCCTATGCCAGTCCCTCCGACTGCCCCTTCATACCCTCCAACCTCCAACCCCAATTTGAGCTCTTTCAGTTCTCCTCCCCTACCATCCTCTTTTCCTCCGTTTGAGTCCCATGTCCCGTATCAACAACCTCCACAACAACAATGTCAATATCCCCCATATGATCAACATCAAACGGCCCCAAGTTATGCCCCTTCTTCCTCCGCAATTCCTCCAAAACCCACTCCCAATTCTGTAACACCGTCCTTTTATCCGGCTTCGTACACTCACCCTGGATCGTCGATTCCTCCTACATATGAAAGTCCGTACGATAATTCCGTGAAATTCGACTATGGTGGTACTTATGTCGATGACAAGTATGGAAGTTTTAATCGGAGTCGGTCTGATTTGGGGTCGGATTTGTATGGAAAGCGACCGGATACGAGGCATGATACTGTTCGTGATGATATTTATGGAGATGGTGTCTATGCCTATAGAGGGGGCGAAACGGAACCATATGGAGCACGGGGTACGGCTCCTAAGTCTTCAACTTGGTCAGGTTTTGATGATTATGGAAGGTCAATTAGTTTTCCCTCTGCGAAGGAACACTCTTTTTCTAACAAGGTTGTGAAAGCTGTGCCGAAGGCTGATACCCAAGAGGATGTTAAAAGCGGGGTGCAAAAATTTCGTGTCAAGCTATTGGCAGAAAGTGGTGGTCTGAGCCCTACTGATGTCCTCTGTCAGATTGGTTTGGATGGAATTCGTATGCTGGATCCAAGTACCAGCCGGCTGTTGAGAGTTTATCACCTTGAGAACATCACGAGATGTGAAAAATTCGATTCCAGTACCCTTGCGTTTTGGTCCAAGAGTCCAGTTGACATTGAGCCAAGACGAATCAGATTGCAATCCAATAGTTACACCACTAACACTCTCTTGGATACAATTACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAAGTAGGAGGCCTGTTGAATCATTGAAAACAAATGAACAACCTACAGAAAAGAAGAAAGGCCTTGTTGATTGGATGAATCTGATCAAACCTGCCAATGAGGAGAAAGATCATTGGATCCCAGATGAAGCAGTTTCAAAATGCACAGCATGTGGGACTGATTTTGGGGCTTTTTTTTGTAAGCATCACTGTAGGAACTGTGGGGATATTTTCTGTGACAAATGCACACATGGTAGAATTGCTCTAACTGCGGATGAGAATGCTCAGCCAGTACGAGTTTGCGACCGATGCATGGCAGAAGTGACACAGAGGCTCAGTAATGCTAAAGAGGCTCCAAACAAGCCTGTATCGCAAAGTCATGAGGATCTTGCGAGGAAACTTCAGGAGGAGCTGGAGAGGAATCGGAGGACATCAGGTTCCAAGTCTGATGGATCTGGAAGGCGGATGAAGGAAGTTGAATGCCCCACTTGCACAGTCCATTTGCAGGTCCAAGTACCTAGCTCGGGTTCAGAGACCATTGAGTGTGGGGTTTGCCAGCACCCATTTCTTTTCTCATCTTTCCTGCGGAAAACCGTCCCTGCTTGTTCTGCTTTATGGAAACTGAACATTCATGTACAGCTGGATTTAGTTCAATATAACTTGACTGGTTTGAAACGATCTGGATGTTCTGTGAATATGATAAGGCTTTTTGGTAAGAGCTTGCTTCAATCTGTGATCAGTTTTTAG 1875 0.4613 MQHGDYSSSPYYQFPPTQNPIPNPNPNPIPIPPDSVPNPYASAPPFTSDYSPYASTYPPYPQNPDPMPVPPTAPSYPPTSNPNLSSFSSPPLPSSFPPFESHVPYQQPPQQQCQYPPYDQHQTAPSYAPSSSAIPPKPTPNSVTPSFYPASYTHPGSSIPPTYESPYDNSVKFDYGGTYVDDKYGSFNRSRSDLGSDLYGKRPDTRHDTVRDDIYGDGVYAYRGGETEPYGARGTAPKSSTWSGFDDYGRSISFPSAKEHSFSNKVVKAVPKADTQEDVKSGVQKFRVKLLAESGGLSPTDVLCQIGLDGIRMLDPSTSRLLRVYHLENITRCEKFDSSTLAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTITAATIQFKEMGGSRRPVESLKTNEQPTEKKKGLVDWMNLIKPANEEKDHWIPDEAVSKCTACGTDFGAFFCKHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAEVTQRLSNAKEAPNKPVSQSHEDLARKLQEELERNRRTSGSKSDGSGRRMKEVECPTCTVHLQVQVPSSGSETIECGVCQHPFLFSSFLRKTVPACSALWKLNIHVQLDLVQYNLTGLKRSGCSVNMIRLFGKSLLQSVISF 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1442 624 PRINTS Proline rich extensin signature 30 46 - -
Lele02g1442 624 PRINTS Proline rich extensin signature 52 64 - -
Lele02g1442 624 PRINTS Proline rich extensin signature 14 26 - -
Lele02g1442 624 PRINTS Proline rich extensin signature 66 87 - -
Lele02g1442 624 PRINTS Proline rich extensin signature 93 109 - -
Lele02g1442 624 SMART fyve_4 417 486 IPR000306 GO:0046872
Lele02g1442 624 CDD PTB 260 333 - -
Lele02g1442 624 MobiDBLite consensus disorder prediction 57 78 - -
Lele02g1442 624 Coils Coil 500 520 - -
Lele02g1442 624 MobiDBLite consensus disorder prediction 1 148 - -
Lele02g1442 624 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 425 485 IPR017455 -
Lele02g1442 624 FunFam Zinc finger, FYVE-type, endofin 412 490 - -
Lele02g1442 624 MobiDBLite consensus disorder prediction 15 40 - -
Lele02g1442 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 490 IPR013083 -
Lele02g1442 624 MobiDBLite consensus disorder prediction 105 130 - -
Lele02g1442 624 SUPERFAMILY FYVE/PHD zinc finger 420 490 IPR011011 -
Lele02g1442 624 PANTHER PROTEIN FREE1 1 568 IPR045893 GO:0036258|GO:0043130
Lele02g1442 624 MobiDBLite consensus disorder prediction 41 56 - -
Lele02g1442 624 Pfam FYVE zinc finger 421 485 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1442 Lele-ChrLele02 18691502 18695355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1442 413 498 EF-hand Containing Proteins AT3G14270 32.990 3.16e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1442 02 18691502 18695355 Lele25g0050 25 306720 309991 CCT
Lele02g1442 02 18691502 18695355 Lele26g0061 26 335090 338293 CCT
Lele02g1442 02 18691502 18695355 Lele27g2036 27 24403034 24406313 CCT
Lele02g1442 02 18691502 18695355 Lele28g0060 28 332220 336525 CCT
Lele02g1442 02 18691502 18695355 Lele02g1442 02 18691502 18695355 ECH
Lele02g1442 02 18691502 18695355 Lele03g1190 03 6973599 6978072 hybridization
Lele02g1442 02 18691502 18695355 Lele04g1424 04 19551137 19554556 hybridization