Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1429 ATGATCGATTCCGTTCTTCTGGCACTCTTCTTGCCCTGCCTCGGCATGAGCGCCGTCTTCATGGTCTACATGTGCCTTCTCTGGTATGCCACTACCCACCGTCCTCAAGTCGCGCTGCCGTCGAAGCCCGCGCAGGAGAAGGGCTTGTCGGCGTCGGAGCTGGAGAAGATGCCCAAAGTCACCGGGAAGGAACTGGTGATGGGGAGTGAATGCGCTGTTTGTCTCGACGAGATCGAGAACGAGCAACCGGCTCGACTTGTTCCAGGTTGCAACCACGGGTTCCATGTGGAATGCGCCGATGCCTGGCTTTCCAAGCACCCTCTCTGCCCGGTTTGTAGAGCGAAGCTGGATCCTCAGATTCTCAATCCCTGTGAAAATCCCTGCTAA 387 0.5711 MIDSVLLALFLPCLGMSAVFMVYMCLLWYATTHRPQVALPSKPAQEKGLSASELEKMPKVTGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVECADAWLSKHPLCPVCRAKLDPQILNPCENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1429 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 5 118 - -
Lele02g1429 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 119 IPR013083 -
Lele02g1429 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Lele02g1429 128 SUPERFAMILY RING/U-box 55 119 - -
Lele02g1429 128 Pfam Ring finger domain 70 113 IPR001841 -
Lele02g1429 128 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1429 Lele-ChrLele02 18596364 18596750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1429 1 128 C3H Transcription Factor Family AT5G42200 54.412 4.23e-46 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1429 02 18596364 18596750 Lele02g1429 02 18596364 18596750 ECH
Lele02g1429 02 18596364 18596750 Lele03g1176 03 6887646 6888032 hybridization
Lele02g1429 02 18596364 18596750 Lele04g1410 04 19457761 19460640 hybridization