Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1422 ATGGACTTGCTTTCGGAACGTGTCAGTAAATTCTTTTCCCTCTTCAACTCCTGCACAAGTTCATTTTCCGGAAGACGGAGACGCCATCGTCACAGACAAATCATTACCAGCGATCCTTACGTAAAAGTTTGCCTCGCCAAAGCTACGGTGGCTCGCACTCGTGTCATCTCCAACTCGCAGGATCCAACGTGGAATGAACATTTCAAAATTCCTCTCGCTCATCCCGTCTCACAGGTCGAGTTCTACGTCAAGGACAATGACTTATTCGGCGCTGATCTCATCGGAGTCGCTACCGTCTCCGCCGAGAGAATCTTGTCTGGTGAACTCATCAGCGATTGGTTCCCCATACTTGGTTCTTACGGTAAAACTCCCAAACCTGATTGTGCCATTCGTCTCGAGATGAAATTCACGAAATGTGAGGATAGTCCATTGTACAGTTACGGAATTTCTTCCAATCCGGACCGTTTCAAAGTGCGGGATTCCTATTTTCCAGGTGGTCGATCTACCATAAGGTCGATGATGTTGGCAACATCTTCTTATGTGGTTGTTGGAACCCTCTTTACACATCATCAGAAATGTGTGATCGTGGATACTCAAGCACAAGGCAATAACCGCAAGATAACTGCATTTATAGGTGGCCTAGACCTGTGTGATGGCCGGTATGACACACCTGAGCATCGACTTTTCCGAGATCTTGGCACTGTTTGTGAGGATGATTATCACAACCCTACATTTCCTGGACAAACTATGCAAACGATGTATGAAATCATAGCACAAGAGTTGAAATCCATGAGCATTCACAATATACACCCAACAGATTACCTCAATTTCTACTGTCTGGGAAATCGGGAGAACTTGCCTCCTGAAGTTTTAAATTCAAGTAATTCAACTCCAAATAACTATAGTGATACGGTTTCAGCTTCACAAAAGTTCCAACGCTTTATGATTTACGTGCACGCCAAGGGTATGATTGTGGATGACGAGTATGTTTTACTCGGTTCCGCCAATATCAATCAACGGTCGATGGCCGGTTCAAGAGATACAGAGATAGCAATGGGTGCATATCAACCCCATCACACATGGGGAAGGAAAGGGGGACATCCTCATGGTCAGGTTTACGGTTCCAACATTCAAAATCAAAACACTATCAATGGACCGGACCGGACCGGCGATTACATATTACAGAGATCCATCATCACCACCCAGCAACACATCGATAGCCATGGCATTGCAACTGTCACGGCGGACGCTACCGCCACCGCCACCACAGCTCCAACCTCTTTGAGTGAAGCCTTAACGCCGAATCTCACCTATAGGCCTGGCAACCCAATCACTTTTGAGTTGCCATTAACTTTAGTCAATGATGGTGGCCCTCCTAAATTCTGTTAA 1389 0.4593 MDLLSERVSKFFSLFNSCTSSFSGRRRRHRHRQIITSDPYVKVCLAKATVARTRVISNSQDPTWNEHFKIPLAHPVSQVEFYVKDNDLFGADLIGVATVSAERILSGELISDWFPILGSYGKTPKPDCAIRLEMKFTKCEDSPLYSYGISSNPDRFKVRDSYFPGGRSTIRSMMLATSSYVVVGTLFTHHQKCVIVDTQAQGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLGTVCEDDYHNPTFPGQTMQTMYEIIAQELKSMSIHNIHPTDYLNFYCLGNRENLPPEVLNSSNSTPNNYSDTVSASQKFQRFMIYVHAKGMIVDDEYVLLGSANINQRSMAGSRDTEIAMGAYQPHHTWGRKGGHPHGQVYGSNIQNQNTINGPDRTGDYILQRSIITTQQHIDSHGIATVTADATATATTAPTSLSEALTPNLTYRPGNPITFELPLTLVNDGGPPKFC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1422 462 SMART C2_3c 23 113 IPR000008 -
Lele02g1422 462 CDD C2_plant_PLD 1 137 - -
Lele02g1422 462 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 314 341 IPR001736 GO:0003824
Lele02g1422 462 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 32 138 IPR035892 -
Lele02g1422 462 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 185 220 IPR001736 GO:0003824
Lele02g1422 462 SUPERFAMILY Phospholipase D/nuclease 310 350 - -
Lele02g1422 462 Gene3D C2 domain 22 135 IPR035892 -
Lele02g1422 462 Pfam Phospholipase D Active site motif 315 341 IPR001736 GO:0003824
Lele02g1422 462 Pfam Phospholipase D Active site motif 186 220 IPR001736 GO:0003824
Lele02g1422 462 Pfam C2 domain 36 116 IPR000008 -
Lele02g1422 462 SMART pld_4 314 341 IPR001736 GO:0003824
Lele02g1422 462 SMART pld_4 185 220 IPR001736 GO:0003824
Lele02g1422 462 Gene3D Endonuclease Chain A 238 360 - -
Lele02g1422 462 PANTHER PHOSPHOLIPASE D 248 375 IPR015679 -
Lele02g1422 462 SUPERFAMILY Phospholipase D/nuclease 183 239 - -
Lele02g1422 462 Gene3D Endonuclease Chain A 136 237 - -
Lele02g1422 462 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1422 Lele-ChrLele02 18537600 18543768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1422 245 297 Phospholipase D Gene Family (Wang group) AT4G35790 50.943 1.39e-10 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1422 02 18537600 18543768 Lele02g1422 02 18537600 18543768 ECH
Lele02g1422 02 18537600 18543768 Lele03g1169 03 6844842 6850155 hybridization
Lele02g1422 02 18537600 18543768 Lele04g1402 04 19415626 19420724 hybridization