Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1402 ATGGATGGAAGGTGGATCTGCCGCCAAAACCTCCTGAGGTTTAATACCCTCCCTCTCAAGCCGTTTCAAGCCCTACTCATCCAACTTCTCTTTTCCCGAACTCGTTTATCTCTCCTGTGGGAATCCTCCTCTCCGATTCACCATCCTGTTTTCGACATGAAAGGCGACAAATCGAAGGCGGAATCTAAGAGAGCTGATGCCAAGCTTGCTGTGAATAGGAAGGGCGCTGCTGCCTCCAAGGCAGGCAGGAAACCAAGCAAGGGGAAGGCGGCTAAAGACCCTAACAAACCAAAGAGACCGGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAAGAAAATCCTGACAACAAAGCAGTGTCTGCTGTTGGAAAAGCTGCTGGGGCAAAATGGAAGTCCATGTCTGAAGCTGAGAAGGCACCCTATGTAGCTAAATCAGAGAAAAGAAAGGCGGAGTATGAGAAGAATATGAAAGCCTATAACAAGAGACAGGCGGAAGGTCCAAATGCTGCAGATGAAGAAGAATCTGAGAAGTCAATGTCTGAGGTTAATGATGCGGAAGGAGGAGATGAAGAGTGCAGCGATGAGCACGTGTGGGATGTTTTCGTGATGGGACCTCATTTGGCTTCACGTTCATCTATGTTAAATGACAGAAGTGGAGTTGAGAGAAAAGACACCGGTGAGAGCGTCGCTGTTGGAAAAGTGGCCAGCAGCGAAGCCCTAGTCACCCAACTCCTCTTGTCCCAAACCTGTTTCTCTCTCCTGTGGAATCCTAGCCTCCAATTCACCATCCTGGTACTTTTCGACATGAAAGGTGGCAAATCGAAGGCTGAATCTAAGAAAGCCGATGCCAAGCTTGCTGTGAATAAGAAGGGCGCCGCCGCCACAAAGGCTGGCGGGAAAGCAAGCAAGGGGAAGGCGGCGAAAGACCCTAACAAACCAAAGAGACCGGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAAAATCCTGACAACAAAGCAGTGTCCGCTGTTGGCAAAGCTGCTGGGGCTAAATGGAAGTCCATGTCTGAAGCTGAGAAAGCACCCTATGTAGCTAAAGCAGAGAAACGAAAGGCTGAGTATGAGAAGAACATGAAAGCATATAACAAGAGACAGGCGGAAGGTCCAAATGCTGCAGATGAAGAAGAATCTGAGAAATCAGTTTCTGAGGTGAATGATGAAGATGAAGGGGATGAAGAGGGCAGTGATGAGAAAGGGACAATAGCTGTTACCTAG 1293 0.4818 MDGRWICRQNLLRFNTLPLKPFQALLIQLLFSRTRLSLLWESSSPIHHPVFDMKGDKSKAESKRADAKLAVNRKGAAASKAGRKPSKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSMSEAEKAPYVAKSEKRKAEYEKNMKAYNKRQAEGPNAADEEESEKSMSEVNDAEGGDEECSDEHVWDVFVMGPHLASRSSMLNDRSGVERKDTGESVAVGKVASSEALVTQLLLSQTCFSLLWNPSLQFTILVLFDMKGGKSKAESKKADAKLAVNKKGAAATKAGGKASKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKAEYEKNMKAYNKRQAEGPNAADEEESEKSVSEVNDEDEGDEEGSDEKGTIAVT 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1402 430 Pfam HMG (high mobility group) box 97 166 IPR009071 -
Lele02g1402 430 Pfam HMG (high mobility group) box 319 388 IPR009071 -
Lele02g1402 430 SMART hmgende2 318 389 IPR009071 -
Lele02g1402 430 SMART hmgende2 96 167 IPR009071 -
Lele02g1402 430 MobiDBLite consensus disorder prediction 71 99 - -
Lele02g1402 430 MobiDBLite consensus disorder prediction 405 421 - -
Lele02g1402 430 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 275 421 IPR031061 -
Lele02g1402 430 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 319 388 IPR009071 -
Lele02g1402 430 Gene3D High mobility group box domain 80 187 IPR036910 -
Lele02g1402 430 Gene3D High mobility group box domain 303 403 IPR036910 -
Lele02g1402 430 MobiDBLite consensus disorder prediction 298 321 - -
Lele02g1402 430 SUPERFAMILY HMG-box 306 394 IPR036910 -
Lele02g1402 430 Coils Coil 370 390 - -
Lele02g1402 430 MobiDBLite consensus disorder prediction 165 190 - -
Lele02g1402 430 MobiDBLite consensus disorder prediction 368 404 - -
Lele02g1402 430 MobiDBLite consensus disorder prediction 133 153 - -
Lele02g1402 430 CDD HMGB-UBF_HMG-box 319 385 - -
Lele02g1402 430 MobiDBLite consensus disorder prediction 357 430 - -
Lele02g1402 430 MobiDBLite consensus disorder prediction 165 198 - -
Lele02g1402 430 CDD HMGB-UBF_HMG-box 97 163 - -
Lele02g1402 430 Coils Coil 148 168 - -
Lele02g1402 430 SUPERFAMILY HMG-box 85 172 IPR036910 -
Lele02g1402 430 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 97 166 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1402 Lele-ChrLele02 18416098 18424217 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele02g1402 HMG_box 8.5e-23 CL0114