Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1390 ATGGCATACCACCAGATCCACGGTCATACGCCCACTCCTGGATCCAATTCAAGTTCTGGATTTCAACCAATAAGCTCACCTTTTGGTGATACCACTTTTACCAAGGTGTTCGTTGGAGGATTGGCGTGGGAGACCCAAAGCGAAACCATGCGCCGATACTTTGAGAAGTTTGGTGACATTCTTGAAGCTGTGGTAATCACTGATAGGAATACAGGCCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCTGAAGCTGCTAGAAGAGCCTGTGCTGATCCAACTCCTATCATTGATGGAAGGAGGGCCAATTGTAACTTGGCTTCACTTGGACGACCGTGGCCTCCTCTGCCACATGGACGGTTAAGGCCAGCTCCGGCTTACATTGGAAATTTGCAACCAGCCCGAGGTGCCTATGTTGGAGGTTTTGGCTATCAGCAGCCACCTTCCTACAGCTATCAACAAGGATTGGTTTATCCTCATTATGGGTATACGACATATGGACATGAATATGCATACCCACAGGGTTTGTACAACCCATATATGGGCCAGCAGTATGTTCAGATATATGGAGTGCCTGGTGCAGTGAATAATACTATTTATCCTTATGGGCTTTTAGGTCAAGCTATTCCCAGTAGTCAGGGTTATGCAGGAATGCAGGGCTATGCGGTAACTGGTCATCACATTGTACCGTATGGTGGAACCAATGTTAATGCCCTGACTACTTCACCTATGCCAACCATTCAAGTACCATATCCCAGTGGTCTTTTAAGCTGTCGTTATGTCATCCCATGGATGGGTAAACAAATTAAAGCTGGTAAGGTAGATAGTGTTAGTAACCAGACCCAGGAATTGCTGCACCAATTCCCGGACAACCACAATTTATTGTCCCTGCGCCTTCTCAGTTTATGCAAGGTGCTGGTCCTGACCAAGCAGCTGGGTGAGGGGGCGATTAAGTTATCCTTAGTTTGCAGCAGGACTAAGAGCAGTGGATCTGCTACATGTGTGGCGGGCTTCCAATCTAGCCTTGCATGTTATATATATTGCATTCTAGAGGTTATATTTAGTCATGCTCACCATCAAGTCGGGTCAGAGGCGTGCTCCAGATGGCGAAGGAAACTGGAAGATGCAGGCTGCATTTCCATTTGGACATTTATATAA 1164 0.4674 MAYHQIHGHTPTPGSNSSSGFQPISSPFGDTTFTKVFVGGLAWETQSETMRRYFEKFGDILEAVVITDRNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPWPPLPHGRLRPAPAYIGNLQPARGAYVGGFGYQQPPSYSYQQGLVYPHYGYTTYGHEYAYPQGLYNPYMGQQYVQIYGVPGAVNNTIYPYGLLGQAIPSSQGYAGMQGYAVTGHHIVPYGGTNVNALTTSPMPTIQVPYPSGLLSCRYVIPWMGKQIKAGKVDSVSNQTQELLHQFPDNHNLLSLRLLSLCKVLVLTKQLGEGAIKLSLVCSRTKSSGSATCVAGFQSSLACYIYCILEVIFSHAHHQVGSEACSRWRRKLEDAGCISIWTFI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1390 387 PANTHER BOULE-RELATED 15 250 IPR037366 -
Lele02g1390 387 MobiDBLite consensus disorder prediction 1 24 - -
Lele02g1390 387 SMART rrm1_1 35 107 IPR000504 GO:0003723
Lele02g1390 387 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 28 114 - -
Lele02g1390 387 CDD RRM_RBM24_RBM38_like 34 109 - -
Lele02g1390 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Lele02g1390 387 Gene3D - 5 116 IPR012677 -
Lele02g1390 387 MobiDBLite consensus disorder prediction 9 24 - -
Lele02g1390 387 SUPERFAMILY RNA-binding domain, RBD 12 120 IPR035979 GO:0003676
Lele02g1390 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 92 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1390 Lele-ChrLele02 18337943 18341923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1390 24 216 C2H2 Transcription Factor Family AT2G19380 27.941 8.61e-17 80.1