Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1369 ATGACTAGAAAGAAGGTGAAGCTCGCGTTCATTGCCAACGATTTTGCGAGAAAAGCCACTTACAAGAAAAGAAAGAAGGGTCTGATTAAGAAGATCGACGAACTCACCACTCTCTGCGGAATAGAGTCCTGTGCGATTGTCTACAGTCCGTATGATTCTCAGCCGGAGGTTTGGCCGTCTCCGTTCGGAGTTCAACGCGTGCTGTCGAAGTTCCGGAGGATGCCGGAGCTGGAACAGAGTAAGAAGATGGTGAACCAGGAAGGGTTTCTGAAGCAGAGGATTCTGAAAGCGAAGGAGCAGTTGAAGAAGCAGAGGAAGGATAATAGAGAGAAGGAGATGACTCAGATCATGTATCAGTATCTGAGTGCAGGGAAGGTTCTTCATAACATGACGATGATCGATCTCAACGATTTAGCTTGGCTCGTCGAGCAGAATCTGAAGGACGTTAATCGGAGGTTCGAGACGCTGGACAAGAGGGCTCAGAGTCAGAGGGCGGCTGACGTGGCGGCCATGGCCGCTGCTGATGCGGCGGCAAGGAGCCGAGATAAGGCGAAGGCGGAGCAGGTGGATGGGAATGGAGTGGAGATGGCCGGCAGCGGGGACGCCATGCCGAAGCCGCAGTGGTATATGGGCATGATGAATGGGGGTGATGAAATGCTGCCGTTTGGAGATGTGAGCCATTCCAATGCGTTTTGGCATGATCACTATTTCCCTTGA 717 0.5202 MTRKKVKLAFIANDFARKATYKKRKKGLIKKIDELTTLCGIESCAIVYSPYDSQPEVWPSPFGVQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQLKKQRKDNREKEMTQIMYQYLSAGKVLHNMTMIDLNDLAWLVEQNLKDVNRRFETLDKRAQSQRAADVAAMAAADAAARSRDKAKAEQVDGNGVEMAGSGDAMPKPQWYMGMMNGGDEMLPFGDVSHSNAFWHDHYFP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1369 238 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lele02g1369 238 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Lele02g1369 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lele02g1369 238 Coils Coil 91 114 - -
Lele02g1369 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele02g1369 238 MobiDBLite consensus disorder prediction 179 200 - -
Lele02g1369 238 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele02g1369 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele02g1369 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele02g1369 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele02g1369 238 PANTHER MADS BOX PROTEIN 3 148 - -
Lele02g1369 238 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lele02g1369 238 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1369 Lele-ChrLele02 18125158 18125874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1369 1 176 Type I MADS-box Gene Family AT5G48670 59.659 1.39e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele02g1369 SRF-TF 5.9e-15 No_clan