Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1350 ATGTCATCTGGCTCCAACATCAAGCAGCAATCTTCTTCTAAAATGCTACCTCCACGTCAGCAATCTCATGTTGGGGGATTGCAAACTTCACTATCCCTAGTTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAACATTCGAGAATCTCCTACTGAAAGTGCCAGTTCACGAGAAACTTGGCCCACTGCCAAAGGTATTGAAGGAAAGAAGATGGAGAATGGGAAGGCTGAGAATGATCGTCCTGAGCAGTCAGTCATCCGTCGAGTTTCTAGTGCTGACAAAATTACTCTTCAGGACATAGGAAGAGAAAGGGTTGACATAATCTCTGAAAAGATGCATCATCTACCTGAAGAATTTCTAGAAGAGTTGAAGAACAGTCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGAGAAGAATTTTTCATTTTGCAGAGGCTTGTTCAAAGTAGAACTGATTTAACAGCTAAGACTTTGATTAGAGCACATCGTGTGCAGGTTGAAATCCTTGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAACATCAGCCTTTCTCAAACTTCCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAAAACCAGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACCAACAGAAATGGTTTCTGCAATCTCTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTAAATACGTGCCGCTGGATTGGATGTGATTTATGCTCTCATTGGACTCATACAGATTGTGCCATTCGTGACCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGTGCTGGACTAAGTGAAATGGTTTTCAGGTGCCACGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAGGATGTTTTTCAGCATTGTGCACCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGCAGGATCTTTAACAGTAGTAAAGACCCCAGAGGGAGGAAACTATTCTGGAAGTGTGATGATCTAAAGGAGAAAATGAAAAGTGGAATAGTGGAACCGAATGCTGCCTGTCGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCCCCAAAGAGCCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGATGCATGCCATAGAATTGCTGAAGTAGTGCAGGAGGCTATCAGAAAAATGGAAGTGGTAGCTGATGAGAAGATGAGAATGTTTAAGAAGGCTCGCTTGGCTCTTGAGGGTTGTGATCAAGAATTAGCAGATAAGGCGAGGGAAGCAGCAGAACTAAAGGTGGACAGGCAAAAAAAGAAATTACAGATAGAAGAACTGGAGAGAATTGTGAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCTAATGAGGCGAAACGAGAGGCCGAGAGGCTCCAGAGAATTGCTCTCGCCAAATCAGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGATTAAATGAGGCTGAAGCTGAGAAGCAATACCTCTATGAGAAGATCAAATTGCAGGAGAGTTCTCATGCTTCGCAGAGTAGTAGTGGCGGTGACCCATCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTCTATAGTGTTCCTCCCAAGGCAGATAGTCAGCCTAATGAACATCACCCATTCCGAACAAATCCATGA 1746 0.4347 MSSGSNIKQQSSSKMLPPRQQSHVGGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSRETWPTAKGIEGKKMENGKAENDRPEQSVIRRVSSADKITLQDIGRERVDIISEKMHHLPEEFLEELKNSLRVILEGGNGSQHREEFFILQRLVQSRTDLTAKTLIRAHRVQVEILVAINTGIQAFLHPNISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCEICTNRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGLSEMVFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFNSSKDPRGRKLFWKCDDLKEKMKSGIVEPNAACRAILMFFQELEVDSPKSLENGESGRMIAPQDACHRIAEVVQEAIRKMEVVADEKMRMFKKARLALEGCDQELADKAREAAELKVDRQKKKLQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLNEAEAEKQYLYEKIKLQESSHASQSSSGGDPSQMLMYSKIHDLLYSVPPKADSQPNEHHPFRTNP 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1350 581 Pfam Coiled-coil region of Oberon 427 560 IPR032535 -
Lele02g1350 581 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 159 174 IPR004082 -
Lele02g1350 581 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 117 139 IPR004082 -
Lele02g1350 581 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 462 482 IPR004082 -
Lele02g1350 581 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 174 189 IPR004082 -
Lele02g1350 581 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 200 221 IPR004082 -
Lele02g1350 581 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 246 266 IPR004082 -
Lele02g1350 581 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 319 338 IPR004082 -
Lele02g1350 581 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 501 523 IPR004082 -
Lele02g1350 581 MobiDBLite consensus disorder prediction 52 66 - -
Lele02g1350 581 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 24 562 IPR004082 -
Lele02g1350 581 SMART PHD_3 239 299 IPR001965 -
Lele02g1350 581 Coils Coil 433 502 - -
Lele02g1350 581 MobiDBLite consensus disorder prediction 1 37 - -
Lele02g1350 581 CDD PHD_OBE1_like 239 298 - -
Lele02g1350 581 MobiDBLite consensus disorder prediction 562 581 - -
Lele02g1350 581 MobiDBLite consensus disorder prediction 69 93 - -
Lele02g1350 581 PIRSF UCP025218 4 567 IPR004082 -
Lele02g1350 581 Pfam PHD - plant homeodomain finger protein 209 332 IPR032881 -
Lele02g1350 581 MobiDBLite consensus disorder prediction 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1350 Lele-ChrLele02 17952383 17954585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1350 209 311 PHD Gene Family AT5G57380 31.731 6.24e-09 57.0