Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1313 ATGCGTACCGTTCTCGCCGATCAATCAGAGCTTGCTTTTGTGATCCGTTGTCGCCTTCCGTGAAAACTAGGGTTTGGTGGAGCATTCGTCTGGGTATCGATAGGGCTAGAGAAGAAAAGGGCTCCTGCTAGCAGTCGTCTCGACAGTGCCTTGGACCCATTACTTATGGCTGAACCAGAAGACAAGCGTTATGCTTCCCTTGAGGAAGGGAAGAAGAGGAAGAGGAAGAGGAATATACCACGGAAATCTGCAACTGAGGAGCAGTTGGAACCTCAAGATTCAAACCAGCATGGGGAGGAAGAAGGCGAAGAAGCTAGAGAGAATGACGGGAATAAGGAGCCTGCTGAGTTGCGTAAGAAAAAGAAGGATAAAAAGGTGAAGCGCGGTGGAGGAGTGAGTGAAGGGGAACATGGCGGCTTTGAGAATGAGGAGGAGAAGGGCGAACAAAGGAAGTTAAAGAGTTCTGGGTCTGGAATTATGAGCACCGTGTCGTTTGATTCTCTGGAATTGTCTGAACCTACTTTTATGGCCATTAAGGACATGGGATTCGAGCATACCACTCAGATTCAAGCGAGAGCAATCCCACCGCTTTTGATTGGGAAAGATGTTCTTGGTGCTGCAAGGACAGGTTCTGGAAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGATGTTCCATGCTCAATTCACTCCACGAAATGGAACTGGTGTCGTTGTCATATGCCCTACTAGGGAGCTTGCAATACAGACACATGCTGTAGCGAAAGAACTTCTCAAGTATCACTCCCAGACTCTTGCATTGGTTATTGGAGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATATAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCAAAGAATAGGCAAACAGCTTTGTTTTCAGCCACCCAAACAAAGAAGGTTGAAGATCTTGCCCGCTTGTCTTTTCAGACAACACCTATCTATGTTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAACCGTTTTGTTGTTCTCTACTCCTTCTTGAAGAGATATCACTCAAAAAAAAAGATGATGGTCTTTTTCTCTTCATGCAACTCTGTGAAATTTCATGCAGACCTTCTCAATTACATACAGATTGATTGTTATAATATACATGGAAAACAAAAGCAGCAAACACGTACTACTACCTTCTTTAACTTCTGTAAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCTGCCCGTGGACTTGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCCGATGAACCCAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGTAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCAAAGGTTCCTGTGAAAGAATATTTATTTGATGAAAAGAAGCTGTCAAATGTACAATCTCACCTGGAAAAGTTGGTGGGTAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTCGATTTACAGGCTGTGGCAGCTTCATTCTGTTTTTCAAATCCACCAAAGGTGAGTTTAGGCATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATGCGTAAGGTTGAAGGAGGCAGACATGGATTCAGCGACAGCAATCCTTACGGTAACAAAATTGCTGCAGATGAAAACCGCCAATTTGTGAGGCATTAG 1959 0.4313 MRTVLADQSELAFVIRCRLPXKLGFGGAFVWVSIGLEKKRAPASSRLDSALDPLLMAEPEDKRYASLEEGKKRKRKRNIPRKSATEEQLEPQDSNQHGEEEGEEARENDGNKEPAELRKKKKDKKVKRGGGVSEGEHGGFENEEEKGEQRKLKSSGSGIMSTVSFDSLELSEPTFMAIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELMFHAQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCANRFVVLYSFLKRYHSKKKMMVFFSSCNSVKFHADLLNYIQIDCYNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYLFDEKKLSNVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVSLGIDSSASKHRKKMRKVEGGRHGFSDSNPYGNKIAADENRQFVRH 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1313 652 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 554 IPR001650 -
Lele02g1313 652 MobiDBLite consensus disorder prediction 127 152 - -
Lele02g1313 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 526 IPR027417 -
Lele02g1313 652 FunFam RNA helicase 380 611 - -
Lele02g1313 652 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 369 IPR014001 -
Lele02g1313 652 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 163 191 IPR014014 GO:0003724
Lele02g1313 652 Pfam DEAD/DEAH box helicase 187 358 IPR011545 GO:0003676|GO:0005524
Lele02g1313 652 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 315 323 IPR000629 -
Lele02g1313 652 MobiDBLite consensus disorder prediction 62 155 - -
Lele02g1313 652 PANTHER RNA HELICASE 112 551 - -
Lele02g1313 652 Gene3D - 140 375 IPR027417 -
Lele02g1313 652 CDD DEADc_DDX18 174 371 IPR044773 GO:0003724|GO:0005524
Lele02g1313 652 Gene3D - 381 623 IPR027417 -
Lele02g1313 652 SMART ultradead3 182 387 IPR014001 -
Lele02g1313 652 SMART helicmild6 424 505 IPR001650 -
Lele02g1313 652 MobiDBLite consensus disorder prediction 80 120 - -
Lele02g1313 652 CDD SF2_C_DEAD 384 515 - -
Lele02g1313 652 SMART DUF4217_3 545 608 IPR025313 -
Lele02g1313 652 Pfam Domain of unknown function (DUF4217) 546 606 IPR025313 -
Lele02g1313 652 Pfam Helicase conserved C-terminal domain 398 504 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1313 Lele-ChrLele02 17506413 17512367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1313 164 523 Eukaryotic Initiation Factors Gene Family AT3G13920 30.194 4.41e-44 161