Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele02g1301 | ATGCAGGGAGCCGCAGCCGACGGAGAGGCGGTGGACTTCGAGCCGGAGGACGATGACTTGATGGACGAAGATGGCGGTGCCGACCCCGACGCCTCTGCATCTCCCCATGCTCCTCCTCTCCCTAAGCTCAAATCTGCCATCACTGGTGGCGCTTCTTCCTCACTCGCCGGCCCTAAAAAGACCAAAGGCCGAGGCTTTCGTCAGGAAACCGATGCCAATCGTAACACCGGCCTTTCTGGGTCCGATTTCGACTCCCTCGCCACCGAGGGTGGGCCCGGTCCTCAACGATCGATTGAAGGATGGATTATTCTGGTCACGGGAGTGCATGAGGAAGCACAGGAGGATGATCTACAAAATGCATTTGGTGAATATGGAGAGATTAAAAATCTACATTTAAATCTTGATCGTCGCACTGGTTTTGTCAAAGGTTATGCATTGATTGAATATGAGCACGCTGAAGAGGCCCGGAACGCAATAGAGAATTTGAATGGATCTGAACTTCTTACTCAAGCCATTTATGTGGACTGGGCTTTTAGCAGTGGACCTATTAATGGGTCAATGAGAAGAAAGAATGCTAGGGCGACACGGGAACGACGCTCGAGGAGTCCTCGGAGGAGATATTGA | 624 | 0.5192 | MQGAAADGEAVDFEPEDDDLMDEDGGADPDASASPHAPPLPKLKSAITGGASSSLAGPKKTKGRGFRQETDANRNTGLSGSDFDSLATEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGSELLTQAIYVDWAFSSGPINGSMRRKNARATRERRSRSPRRRY | 207 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele02g1301 | 207 | MobiDBLite | consensus disorder prediction | 1 | 94 | - | - | |
Lele02g1301 | 207 | Gene3D | - | 50 | 192 | IPR012677 | - | |
Lele02g1301 | 207 | CDD | RRM_RBM8 | 95 | 182 | IPR033744 | GO:0003729 | |
Lele02g1301 | 207 | PRINTS | RNA binding motif protein 8 family signature | 166 | 178 | IPR008111 | GO:0003723|GO:0005634|GO:0005737|GO:0006396 | |
Lele02g1301 | 207 | PRINTS | RNA binding motif protein 8 family signature | 55 | 67 | IPR008111 | GO:0003723|GO:0005634|GO:0005737|GO:0006396 | |
Lele02g1301 | 207 | PRINTS | RNA binding motif protein 8 family signature | 148 | 164 | IPR008111 | GO:0003723|GO:0005634|GO:0005737|GO:0006396 | |
Lele02g1301 | 207 | PRINTS | RNA binding motif protein 8 family signature | 92 | 106 | IPR008111 | GO:0003723|GO:0005634|GO:0005737|GO:0006396 | |
Lele02g1301 | 207 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 103 | 171 | IPR000504 | GO:0003723 | |
Lele02g1301 | 207 | SMART | rrm1_1 | 102 | 175 | IPR000504 | GO:0003723 | |
Lele02g1301 | 207 | FunFam | RNA-binding protein 8A-like | 31 | 197 | - | - | |
Lele02g1301 | 207 | MobiDBLite | consensus disorder prediction | 192 | 207 | - | - | |
Lele02g1301 | 207 | PANTHER | RNA-BINDING PROTEIN 8A | 7 | 206 | IPR008111 | GO:0003723|GO:0005634|GO:0005737|GO:0006396 | |
Lele02g1301 | 207 | MobiDBLite | consensus disorder prediction | 186 | 207 | - | - | |
Lele02g1301 | 207 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 101 | 179 | IPR000504 | GO:0003723 | |
Lele02g1301 | 207 | MobiDBLite | consensus disorder prediction | 10 | 26 | - | - | |
Lele02g1301 | 207 | SUPERFAMILY | RNA-binding domain, RBD | 94 | 205 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele02g1301 | Lele-ChrLele02 | 17322314 | 17325643 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele02g1301 | 103 | 177 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 29.333 | 9.81e-09 | 52.4 |