Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1301 ATGCAGGGAGCCGCAGCCGACGGAGAGGCGGTGGACTTCGAGCCGGAGGACGATGACTTGATGGACGAAGATGGCGGTGCCGACCCCGACGCCTCTGCATCTCCCCATGCTCCTCCTCTCCCTAAGCTCAAATCTGCCATCACTGGTGGCGCTTCTTCCTCACTCGCCGGCCCTAAAAAGACCAAAGGCCGAGGCTTTCGTCAGGAAACCGATGCCAATCGTAACACCGGCCTTTCTGGGTCCGATTTCGACTCCCTCGCCACCGAGGGTGGGCCCGGTCCTCAACGATCGATTGAAGGATGGATTATTCTGGTCACGGGAGTGCATGAGGAAGCACAGGAGGATGATCTACAAAATGCATTTGGTGAATATGGAGAGATTAAAAATCTACATTTAAATCTTGATCGTCGCACTGGTTTTGTCAAAGGTTATGCATTGATTGAATATGAGCACGCTGAAGAGGCCCGGAACGCAATAGAGAATTTGAATGGATCTGAACTTCTTACTCAAGCCATTTATGTGGACTGGGCTTTTAGCAGTGGACCTATTAATGGGTCAATGAGAAGAAAGAATGCTAGGGCGACACGGGAACGACGCTCGAGGAGTCCTCGGAGGAGATATTGA 624 0.5192 MQGAAADGEAVDFEPEDDDLMDEDGGADPDASASPHAPPLPKLKSAITGGASSSLAGPKKTKGRGFRQETDANRNTGLSGSDFDSLATEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGSELLTQAIYVDWAFSSGPINGSMRRKNARATRERRSRSPRRRY 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1301 207 MobiDBLite consensus disorder prediction 1 94 - -
Lele02g1301 207 Gene3D - 50 192 IPR012677 -
Lele02g1301 207 CDD RRM_RBM8 95 182 IPR033744 GO:0003729
Lele02g1301 207 PRINTS RNA binding motif protein 8 family signature 166 178 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele02g1301 207 PRINTS RNA binding motif protein 8 family signature 55 67 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele02g1301 207 PRINTS RNA binding motif protein 8 family signature 148 164 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele02g1301 207 PRINTS RNA binding motif protein 8 family signature 92 106 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele02g1301 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Lele02g1301 207 SMART rrm1_1 102 175 IPR000504 GO:0003723
Lele02g1301 207 FunFam RNA-binding protein 8A-like 31 197 - -
Lele02g1301 207 MobiDBLite consensus disorder prediction 192 207 - -
Lele02g1301 207 PANTHER RNA-BINDING PROTEIN 8A 7 206 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lele02g1301 207 MobiDBLite consensus disorder prediction 186 207 - -
Lele02g1301 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Lele02g1301 207 MobiDBLite consensus disorder prediction 10 26 - -
Lele02g1301 207 SUPERFAMILY RNA-binding domain, RBD 94 205 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1301 Lele-ChrLele02 17322314 17325643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1301 103 177 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 9.81e-09 52.4