Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1269 ATGAAGCTCAAGGTTTACTATTATATATTGCAAACTAAGAAACAATTGAAAGTTCGCGTTCAGTCGGTAGAATTAATGGAAGACGTTGAGTCCGATGAGCCCGAAAAGAAGAGGGCGCATTTGAGTTCAGTATCCTCCCCCGTGGCGAGGAATTCAAACAACCCATCAACCAACAACAAATGTGCTGATGTGGGAGTTTTGCAGTTTCAGAACCAGCAGCTTGTTCAACAGATAGACCTCCAAAAACAGGCATTGCATGACCTTGAAGTAAAAATCGGAGATTTAAAATACAGGAAAAACTCATATGATGACATGATAATTGCAGTAAACGAACTCTGGAGTCAGTTGGTTGATGATCTGATTTTTCTTGGAATACGAGCTGGGGGAGGCCAAAATGCATTTAAAAATTTGGAGCACCCTGATTCACTTTCTATGTGTTCGGTTGAGGATATCTTCCTTTCCAGATTAATACAGAAGGATTTCATTGAAACCAACAATCACAATGAGGTCATTAACTTTGTTGAGGAAGCACTTGCTCTGCGTCAGTTATCTACAAGGGAGTTATTGAAAATTCTTGATGATACCATTGATGCTCAGATTGAAAGAACTTACTGTATTACCCAGGGTTTGGAAGGGTCAACTTCTGAAGATGCTATCATTCAAATGTCTAAGATTGATGATATAATGAAAGAGGAGGCAAACAATTTACGTGAAGTAATTGATGCTCTCCATGTCAAGCATAAAGATTATGCTGTTGCTATTGAAAATTATGTCAGCTGCCAGTTACAGGATCAATCTGAGATTAAACGCATAGCAGGTGAACTTGATGAAAGCATGGCTGAACTTGAAGAGAGTAGGAGAAAATTAGTTAATCTGAAAATGCAGAAAGATGCAGCAATAGGGATGCAGTCACCTGGTTCAGAAGCTGTTAATGGGACCTTGTCTCCTGAAAAGCCTTCAGACAAGACAATGGGTCTGCGCGAGTTGAAAGATTCAATTGAGGAAGCAAAGATAGTGGCCACTGACCGTCTTTCAGAGCTTCAAGAAGCCCAGGAAGACAATCTGACCTTGAGAGGGCATTTGCAAGATCTTCAGAATGAATTGACTGATGACAAGTATGTATGTTCATCGCGACTATATTCTTTGGTAAATGATCAACTTCAACATTGGAATACTGAATTGGAGCGGTATAAAGCATTGACAGAGTCTCTGCAGGCTGAAAGAGTCCATGTCATGAAATGGGAAAAGGAACTGAACTCAAAATTGGAGTCTGCAGATACTGCAAGGCTTGCAGTTGACAATTCTGATTGTAGGATTGAAGAGCTAGAGCTTCAGTTGCAAAAGTGTACTATTGAAAATAACGATATTGAAATAGAGATGGAAGTAGCTATACAGGATACTGGGAGAAAAGATATTAATTCTGAGTTTCATGTTATGGCTTCTGCCTTATCTAAGGAAATGGGCATGATGGAAGCTCAATTGAAACGATGGAAGGATGCAGCTCATGAGGCAGTTTCCTTACGTGAGAAGGCACATTCACTAAGATCTTTGTTAAGTGGGAAGACAATTGAAATCAAAAGCTTAGCAAACAAATGTTCTGAGCAGGCTGTGGAGATAAAGTCTTTAAAAACATTGATTGAAAAGCTGCAGAAGGAAAAAATGGAATTACAATTCTTTCTGGACTTGCATGGACAGGAGAATCATGAAAAAAGAGGTTTGGTAGAAATCAGAGAATCAGAAAGTAAAGCTCTCGCTCAAGCTGAAGTACAGAAAAATGCTTTAGATGAGCATAGTTTAGAGTTGAGGGTAAAAGCTGCCAATGAAGCTGAAGCTGCTTATGAACAAAGGCTTTCTGCAGCAGAAGCTGAGATAGAGGATCTAAGGGCCAAGCTGGAAGCTTCTGAAAGAGATATTTTGGAGCTGACTGAGGCAATTAAAGTCAAAGATGCTGAGTCAGAGGCTTATATATCTGAAATCGAGACCATTGGACAAGCATACGAAGATATGCAGACGCAGAACAAACATCTATTGCAGCAGGTGGCTGAGAGGGATGACTATAATATTAAGCTTGTATCAGAGAGCGTAAAGACAAAACAGGCACATGGCATTTTACTTTCTGAGAAGCAGGCCTTAGCAAAGCAGCTTCAACAAATTAACGCTTCAATAGAAACTTTAAAGATGAGGATGACACACAGTGAAGATCAGATGAAAGCTCTTTTATCGGAAGCCATTAAATATACTCAAGAGGAAAAGCACCTTGCAGTTACCCTGGAATCTGCAAAGTGGGAATTGGCTGATGCTGAAAGGGAGTTGAAGTGGCTTAAGTCTACTGTTACTTCTTCTGAGAAAGAGTATGATCAAATTCAGAAAGACTTGGAAGCTATGCAAATTGAGTTTGATATTGAAAGGAGTTCAAAACAGAAGCTGGAAGAAGAACTCAGGGACTTAAACAGCAAAATTGATGAGCTGAGTTCCGAAACAGGAGAGACAGCAATACAAAAACTACAAGATGAAATTAGGGTTTGCAAGAACATGATCAAGTGCACCGTCTGTTCTGATCGTCCAAAGGAGGTTGTGATTGTGAAGTGTTATCATCTGTTCTGCAATCCTTGTATTCAAAGGAACCTAGAACTCCGTCATCGCAAGTGCCCTGCCTGTGGGACTGCTTTCGGTCAGAGTGATGTTCGGTTTGTGAAAATATGA 2703 0.4007 MKLKVYYYILQTKKQLKVRVQSVELMEDVESDEPEKKRAHLSSVSSPVARNSNNPSTNNKCADVGVLQFQNQQLVQQIDLQKQALHDLEVKIGDLKYRKNSYDDMIIAVNELWSQLVDDLIFLGIRAGGGQNAFKNLEHPDSLSMCSVEDIFLSRLIQKDFIETNNHNEVINFVEEALALRQLSTRELLKILDDTIDAQIERTYCITQGLEGSTSEDAIIQMSKIDDIMKEEANNLREVIDALHVKHKDYAVAIENYVSCQLQDQSEIKRIAGELDESMAELEESRRKLVNLKMQKDAAIGMQSPGSEAVNGTLSPEKPSDKTMGLRELKDSIEEAKIVATDRLSELQEAQEDNLTLRGHLQDLQNELTDDKYVCSSRLYSLVNDQLQHWNTELERYKALTESLQAERVHVMKWEKELNSKLESADTARLAVDNSDCRIEELELQLQKCTIENNDIEIEMEVAIQDTGRKDINSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLRSLLSGKTIEIKSLANKCSEQAVEIKSLKTLIEKLQKEKMELQFFLDLHGQENHEKRGLVEIRESESKALAQAEVQKNALDEHSLELRVKAANEAEAAYEQRLSAAEAEIEDLRAKLEASERDILELTEAIKVKDAESEAYISEIETIGQAYEDMQTQNKHLLQQVAERDDYNIKLVSESVKTKQAHGILLSEKQALAKQLQQINASIETLKMRMTHSEDQMKALLSEAIKYTQEEKHLAVTLESAKWELADAERELKWLKSTVTSSEKEYDQIQKDLEAMQIEFDIERSSKQKLEEELRDLNSKIDELSSETGETAIQKLQDEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1269 900 Coils Coil 603 651 - -
Lele02g1269 900 SUPERFAMILY RING/U-box 847 891 - -
Lele02g1269 900 Coils Coil 532 552 - -
Lele02g1269 900 CDD RING-HC_BRE1_like 846 887 - -
Lele02g1269 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 829 899 IPR013083 -
Lele02g1269 900 Coils Coil 71 91 - -
Lele02g1269 900 MobiDBLite consensus disorder prediction 27 57 - -
Lele02g1269 900 Coils Coil 425 459 - -
Lele02g1269 900 ProSitePatterns Zinc finger RING-type signature. 863 872 IPR017907 -
Lele02g1269 900 Coils Coil 268 295 - -
Lele02g1269 900 Gene3D - 704 828 - -
Lele02g1269 900 ProSiteProfiles Zinc finger RING-type profile. 848 886 IPR001841 -
Lele02g1269 900 Coils Coil 330 367 - -
Lele02g1269 900 Pfam Zinc finger, C3HC4 type (RING finger) 847 889 - -
Lele02g1269 900 Coils Coil 757 826 - -
Lele02g1269 900 MobiDBLite consensus disorder prediction 303 323 - -
Lele02g1269 900 SMART ring_2 848 886 IPR001841 -
Lele02g1269 900 PANTHER RING FINGER PROTEIN-RELATED 31 900 IPR013956 GO:0004842|GO:0010390
Lele02g1269 900 Coils Coil 387 407 - -
Lele02g1269 900 Coils Coil 708 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1269 Lele-ChrLele02 16203541 16222667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1269 815 895 RAD5 or RAD16-like Gene Family AT5G05130 26.667 8.12e-08 54.3