Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele02g1246 | ATGAGAGACGCCATGGGAAGGGGCAGAGGGCTTCTTCGCCTCTATTCTTCTCTTCGCTGTGGAACTACGAAATCACCATCTTCTGCGTTTTCTTCTCGTCGGCTTGTTATTCCCTTAAGCTCTTCTTTCTCCTCAAAGCCTTGTGGTGAGAACGACAAGGGATCACCCAAGTCTCAAAGGGATTCGTTGCTTCTAGAAAAATTTAGACTTAGAAAACTCAAAGGTTCTTCTACAACTTCACAAAGTAGCCCTCAAGCATCGTGTTCTACTTCAGAGAAGTTAGTTGAAAAGGATTTGAAGAATGAGGATGAATCCTCTAAGGTGGTGACAAATTTTAAGGGGTTAGGTTTGCGTGAGGACCTTATTGAGGTTTTGGAGAAAATAGGGCTTCTTGTTCCTACTGAGATTCAATGTGTGGGAATTCCTGCTGTTTTGGAAGGGAAGAGTGTGTTGATGAGTTCAGTCTCTGGGCCTGATAGGATTTTGGCTTACTTGTTGCCTCTTATTCAGCTTTTGAGACAAGATACAAAGTTGTCCCATTCAAATTCGCGGCATCCTCGGGCCATTGTGCTTTGTGCCACTGAGGAGAAAGCTGAACAGTGCTTTAATGCTGCAAAATATATCATCCATCACACGGAATTGAAATCTACAATGGATGATTCACCAACTAATGAGAAGTCAGATGTTTCAATTGGCCTTGTAATTGGACCTCCTAGTGAGATTCTTCAGTACATTGAAGAGGGAACAGTTATTCCTGAAGAAATAAGATATTTGGTAGTAGATGATGCAGACTGCATGTTTGATAGTGGCCTCGGCCTTGAAGTTCGCAAGATTCTCAGACACTTACCAGATTATACTTCAGAATTCACTGACAAGGGATTGCAAACTGTTTTGGTTACTTCAACGATAGCAGAGGTGTTGGGTGAAGAGTCTCCTGTCCTAAAGCGCTTGGAGAATAATCATGCAGGACATGTTTCTGCGTTATTGTTAGAAATGGATCGTGCAGAAGTCTTCCAACTCACAGAATCATTGGTTGCTTTAAGGCAAAAAATGACAGAGGCCGTTAATTCCTTTCTTAAATGA | 1083 | 0.4211 | MRDAMGRGRGLLRLYSSLRCGTTKSPSSAFSSRRLVIPLSSSFSSKPCGENDKGSPKSQRDSLLLEKFRLRKLKGSSTTSQSSPQASCSTSEKLVEKDLKNEDESSKVVTNFKGLGLREDLIEVLEKIGLLVPTEIQCVGIPAVLEGKSVLMSSVSGPDRILAYLLPLIQLLRQDTKLSHSNSRHPRAIVLCATEEKAEQCFNAAKYIIHHTELKSTMDDSPTNEKSDVSIGLVIGPPSEILQYIEEGTVIPEEIRYLVVDDADCMFDSGLGLEVRKILRHLPDYTSEFTDKGLQTVLVTSTIAEVLGEESPVLKRLENNHAGHVSALLLEMDRAEVFQLTESLVALRQKMTEAVNSFLK | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele02g1246 | 360 | Pfam | Poly-adenylate binding protein, unique domain | 314 | 356 | IPR002004 | GO:0003723 | |
| Lele02g1246 | 360 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 141 | 321 | IPR014001 | - | |
| Lele02g1246 | 360 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 106 | 306 | IPR027417 | - | |
| Lele02g1246 | 360 | SUPERFAMILY | PABC (PABP) domain | 306 | 356 | IPR036053 | GO:0003723 | |
| Lele02g1246 | 360 | Gene3D | - | 72 | 310 | IPR027417 | - | |
| Lele02g1246 | 360 | MobiDBLite | consensus disorder prediction | 73 | 100 | - | - | |
| Lele02g1246 | 360 | MobiDBLite | consensus disorder prediction | 74 | 92 | - | - | |
| Lele02g1246 | 360 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 110 | 138 | IPR014014 | GO:0003724 | |
| Lele02g1246 | 360 | SMART | ultradead3 | 129 | 331 | IPR014001 | - | |
| Lele02g1246 | 360 | Pfam | DEAD/DEAH box helicase | 134 | 304 | IPR011545 | GO:0003676|GO:0005524 | |
| Lele02g1246 | 360 | Gene3D | - | 311 | 359 | - | - | |
| Lele02g1246 | 360 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 52 | 304 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele02g1246 | Lele-ChrLele02 | 14543976 | 14547022 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele02g1246 | 109 | 303 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 22.500 | 1.87e-10 | 60.1 |