Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele02g1235 ATGCAGCTTCGTGGCGTACGAGCGCAATATATAAACATCGGAGGTGGTGTTGGAGGGGAGATCCCTGACAACAAGCGCCTTCAGTATGCCTTGCAGCACGTACATGGAATTGGCCGTTCCAAAGCTCACCATATTGTCTGTGAGCTTGGGGTTGAGAACAAATTTGTCAAGGACCTAAGTAAGAGAGAGTTATATTCCCTTCGAGAATTACTTTCCAAGTACTTGCTCGGAAATGACTTGAAAAGGTGTGTTGAGAAAGATATAGAAAGGTTGGTCAGTATTCAGTGCTACAGGGGTTTCAGACACGTGGATGGGTTACCCTGCCGAGGACAACGGACACATACGAATGCTCGCACCAGGAAGAGCAGGCCAGGTTTTGCTGCATCAAGATCTGCTCAATAG 402 0.4751 MQLRGVRAQYINIGGGVGGEIPDNKRLQYALQHVHGIGRSKAHHIVCELGVENKFVKDLSKRELYSLRELLSKYLLGNDLKRCVEKDIERLVSIQCYRGFRHVDGLPCRGQRTHTNARTRKSRPGFAASRSAQ 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele02g1235 133 MobiDBLite consensus disorder prediction 109 133 - -
Lele02g1235 133 ProSitePatterns Ribosomal protein S13 signature. 98 111 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele02g1235 133 FunFam Ribosomal protein S13 82 121 - -
Lele02g1235 133 Hamap 30S ribosomal protein S13 [rpsM]. 10 129 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele02g1235 133 FunFam 30S ribosomal protein S13 17 82 - -
Lele02g1235 133 Pfam Ribosomal protein S13/S18 18 119 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele02g1235 133 SUPERFAMILY S13-like H2TH domain 18 122 IPR010979 GO:0003676
Lele02g1235 133 Gene3D 30s ribosomal protein s13, domain 2 82 121 IPR027437 -
Lele02g1235 133 ProSiteProfiles Ribosomal protein S13 family profile. 17 122 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele02g1235 133 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 16 121 - -
Lele02g1235 133 Gene3D - 17 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele02g1235 Lele-ChrLele02 14287352 14287857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele02g1235 25 122 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 29.508 7.60e-07 43.9